Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0114 GATAACCACTTTATTACGACAACAAATAACGGAAATTGGAACCTGTCTGTGGTGGAAACCATAATATCTCAGATTTCAGATCTATACGACGTCGTTGCAGATCCAATTCCATTAATGGCTCCCTTCAGTGGCGATGAAACTGCTCCATTTTTTGGCTTCCTTGGAGCCGCAGCTGCACTTGTCTTCTCCTGTATGGGAGCTGCCTATGGGACCGCAAAGAGTGGTGTAGGCGTAGCGTCGATGGGTGTGATGAGACCTGAACTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGTCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCTAAGGCTAAATCTTATTATCTCTTTGATGGTTATGCGCATCTCTCCTCTGGTCTTGCCTGCGGGCTTGCTGGCCTCTCTGCTGGCATGGCTATCGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAACTTTTTGTGGGAATGATTCTGATCCTCATCTTTGCTGAAGCTCTTGCTCTGTATGGTCTAATTGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGAGTAA 609 0.4565 DNHFITTTNNGNWNLSVVETIISQISDLYDVVADPIPLMAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0114 202 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal2g0114 202 PRINTS Vacuolar ATP synthase 16kDa subunit signature 93 117 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal2g0114 202 PRINTS Vacuolar ATP synthase 16kDa subunit signature 144 170 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal2g0114 202 PRINTS Vacuolar ATP synthase 16kDa subunit signature 171 194 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal2g0114 202 SUPERFAMILY F1F0 ATP synthase subunit C 51 114 IPR035921 -
Lal2g0114 202 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 41 202 - -
Lal2g0114 202 SUPERFAMILY F1F0 ATP synthase subunit C 124 193 IPR035921 -
Lal2g0114 202 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 50 158 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lal2g0114 202 CDD ATP-synt_Vo_c_ATP6C_rpt1 50 117 - -
Lal2g0114 202 Pfam ATP synthase subunit C 54 113 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lal2g0114 202 Pfam ATP synthase subunit C 134 192 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lal2g0114 202 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 41 202 - -
Lal2g0114 202 Gene3D - 48 199 IPR035921 -
Lal2g0114 202 CDD ATP-synt_Vo_c_ATP6C_rpt2 126 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0114 Lal-Chr2 689727 692876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0114 39 202 Primary Pumps ATPases(2) AT2G16510 98.780 1.98e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0114 K02155 - gmx:100812380 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0114 2 689727 692876 Lal2g0114 2 689727 692876 ECH
Lal1g0190 1 1142018 1144662 Lal2g0114 2 689727 692876 LSH
Lal2g0114 2 689727 692876 Lal9g0132 9 854936 858096 LSH