Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0088 ATGGGTTCAGAGAGAGTGAGTGGGAAGGTGAAGTGGTTCAATGACACCAAGGGCTTTGGATTCATTACCCCTGATGATGGTGGTGAGGACCTTTTCGTTCACCAATCTCAGCTTAAATCTGATGGTTTTCGATCCCTAGCAGAAGGTGAATCTGTTGAGTTTCAAATCGAAGCTGATTCCGATGGTCGATCCAAGGCTGTTGATGTAACTGGACCTGATGGTGCCAACGTGCAGGGTAGCAGACGTGGCGGTGGCGGTGGCGGTGGAGGCAGTTATGGCGGTGGAAGAGGTGGAGGAGGATATGGTGGTGGTGGTGGACGCGGTGGAGGACGTGGTAGTAGAGGAGGATATGGTGACGGAGGCTACGGGGGTGGCTATGGCGGTGGTGGTGGCGGTGGCGGTGGAGGATGTTACAGCTGTGGCGAGAGTGGTCACATTGCTAGGGAGTGTCCTCAGGGAGGCGGTGGTGGCGGTGGAAGATATGGAGGCGGTGGTGGTGGTGGTGGTGGTGGTGGCGGAAGCTGCTACAACTGTGGAGAGTCTGGCCATTTCGCAAGAGATTGCACAACCTCCGGTGGTCGTTGA 585 0.5624 MGSERVSGKVKWFNDTKGFGFITPDDGGEDLFVHQSQLKSDGFRSLAEGESVEFQIEADSDGRSKAVDVTGPDGANVQGSRRGGGGGGGGSYGGGRGGGGYGGGGGRGGGRGSRGGYGDGGYGGGYGGGGGGGGGGCYSCGESGHIARECPQGGGGGGGRYGGGGGGGGGGGGSCYNCGESGHFARDCTTSGGR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0088 194 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lal2g0088 194 MobiDBLite consensus disorder prediction 149 168 - -
Lal2g0088 194 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lal2g0088 194 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lal2g0088 194 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lal2g0088 194 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lal2g0088 194 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lal2g0088 194 SMART csp_8 7 72 IPR011129 GO:0003676
Lal2g0088 194 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 190 - -
Lal2g0088 194 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lal2g0088 194 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lal2g0088 194 MobiDBLite consensus disorder prediction 57 110 - -
Lal2g0088 194 ProSiteProfiles Zinc finger CCHC-type profile. 175 188 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 Gene3D - 2 83 IPR012340 -
Lal2g0088 194 Gene3D - 133 160 - -
Lal2g0088 194 Gene3D - 170 194 - -
Lal2g0088 194 Pfam Zinc knuckle 174 189 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 Pfam Zinc knuckle 136 152 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 ProSiteProfiles Zinc finger CCHC-type profile. 137 152 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 PANTHER COLD SHOCK PROTEIN 1 3 190 - -
Lal2g0088 194 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Lal2g0088 194 SUPERFAMILY Retrovirus zinc finger-like domains 128 191 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0088 Lal-Chr2 548180 548764 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lal2g0088 CSD 2e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0088 - - rcu:107262322 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0088 2 548180 548764 Lal2g0088 2 548180 548764 ECH
Lal1g0145 1 943415 944035 Lal2g0088 2 548180 548764 LSH
Lal2g0088 2 548180 548764 Lal9g0115 9 758636 759250 LSH