Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0084 ATGACATCCTCCTTCATCAAACTCGATGACTCCCCAATGTTCCAGAAGCAGTTATTTTCGCTGGAAGAAACAGCTGATGAGTTAAAGGAACGGTGCCAGAAACTATTCAAAGGGTGCAATAAGTTTATGGAAGCTTTGGGGGAAGCATATAATGGAGAAACTTCCTTTGCTGATTCGTTAGAAGTATTTGGCAGTGGCCAAGACGACCCTGTTAGTTTATCAATTGGAGGACCAGTGATATCTAAGTTTATTACAACACTGCGTGAGCTAGCTAGTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCACGTGTTGATTGACCGGCTGACAGAGTTTATGACTGTTGATTTGCAAGATGTGAAGGATTCTCGCCGACGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAAAAGTTTGTGTCTTTGAAGAAAACTACACCAGGAGACATTGTCATTGAATTAGAAGAGGATCTACAAAATTCAAAGTCAGCGTTTGAAAAAAGTCGCCTCAATCTAGTGAACTCTCTCATGAACATTGAAGTTAAAAAGAAGTATGAGTTCTTAGAGTCCATTAGTGCAATAATGGATTCTCATCTGAGATACTTTAAGTTGGGTTATGACTTACTGAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCTCATCATTCCAAAGAAATGGCTAATATTGAGCAAGATAAGCTTGAAAAACGAATCCTGGAATACCGAACTCAGGCCGAGCTGGAAAATATACAAGCTTCTCATAATACAGAACCCTTGCCAGGTGCTGATGGCACCCATGTCATAGGCTTGAACTCTTACAAAAGTTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGGGAGGCAAGTAATTGGCCTTTTCTGGTTCAAACAGTTAAACAAGGCTATTTGTTGAAACGATCATCAAGCTCGCACGGAGGTTGGAATCGGAGGTTCTTTGTACTTGATAATCGAGGGAGTTTATATTATTACAGAGTGAAGGGATGCAAACCCATGAGCTCTCAGTCATACCATTATACTCGCTCTGGTGAACAAGACATTGGCATGTTCGGTAGATTTCGTTCAAGGCACAACAGGGCAGCATCACTAAATGAGGATATTTTGGATTGTTGTGCAGTTGATCTCTGCACATCCACTATAAAGATGGATGCAGAGGATATAGATCTACGACTTTGCTTCCGTATAATTTCTCCCTCAAAATCATATACACTGCAGGCCGAAAATGAAGCTGACAGGATGGAGTGGGTAAACAAAATAACTGGAGCCATCACATTGCTTTTTAATTCTCAGTTTCTTCAGCCTCATTATGGTAGATTACATTTCGAAAATAAAAACTCAGATGGTGGTGCTTCCTTAGCTAGCCAATCAGAAGATAGTAATATATCTGTGATGGATGGCATATATTCCAGGGAAGTGGTTAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGGTATATGTGCTGAATGCAGTGCTCCTGAACCAGAATGGGCATCTTTAAATCATGGCATATTACTGTGTATTGAATGCTGTGGGGTGCATCGAAATATTGGAGTTCATATCTCGAAGGTGAGATCAGTAACATTAGACGTTAGAGTTTGGGAACCTACTGTTTTGGAGTTATTTGATAACTTGGGTAATGCTTACTGTAATTCTATCTGGGAAGGCTTGCTTGTAGTTGATGATGAAAGAGTAGCTGAGTCAAATGCGCCTATGAAACCATGCCCCACAGATGCCTTCCAATACAAGGAAAAGTACATTCAAGCAAAGTATGTAGAGAAATCACTAATCATCAGGGAAGAGGATATACCCGGGACTCCTTCACTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTATAAATGTACGAGAAGTGTATCGCCTTATTGTTACATCAAAATCAAATCTGATAAACACGATATATGATGACATTGTTCACCAAGCTGAGGCTAAAGATTTGAACTTAGGACCTATGGATGAAGGGCATCAGCACGATCCTGAAGCCTGTCTGAGAATTAAAGAGACTAATGAGACTGATAGGTGTTTCCGTGGGTGGTCATTATTACATCTGGCATGTCATTCTGACAGTGCACTAATGATGGAGTTATTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGGAAGGACTCCCTTGCACCTTTGCATTTCTAGTGGGAAGAACCCATTGGCAAAGTTTCTATTGAGAAGGGGTGCTAAACCATCAGTTAAAGATGCTGGTGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATCAAGCTTGCTGAATCACAGTAA 2367 0.4085 MTSSFIKLDDSPMFQKQLFSLEETADELKERCQKLFKGCNKFMEALGEAYNGETSFADSLEVFGSGQDDPVSLSIGGPVISKFITTLRELASFKELLRSQVEHVLIDRLTEFMTVDLQDVKDSRRRFDKAVHSYDQSREKFVSLKKTTPGDIVIELEEDLQNSKSAFEKSRLNLVNSLMNIEVKKKYEFLESISAIMDSHLRYFKLGYDLLSQMEPYIHQVLTYAHHSKEMANIEQDKLEKRILEYRTQAELENIQASHNTEPLPGADGTHVIGLNSYKSFEAGMQSATKGEASNWPFLVQTVKQGYLLKRSSSSHGGWNRRFFVLDNRGSLYYYRVKGCKPMSSQSYHYTRSGEQDIGMFGRFRSRHNRAASLNEDILDCCAVDLCTSTIKMDAEDIDLRLCFRIISPSKSYTLQAENEADRMEWVNKITGAITLLFNSQFLQPHYGRLHFENKNSDGGASLASQSEDSNISVMDGIYSREVVSVSKILRGIPGNGICAECSAPEPEWASLNHGILLCIECCGVHRNIGVHISKVRSVTLDVRVWEPTVLELFDNLGNAYCNSIWEGLLVVDDERVAESNAPMKPCPTDAFQYKEKYIQAKYVEKSLIIREEDIPGTPSLSIRIWQAVQAINVREVYRLIVTSKSNLINTIYDDIVHQAEAKDLNLGPMDEGHQHDPEACLRIKETNETDRCFRGWSLLHLACHSDSALMMELLLQFGADVNMCDYHGRTPLHLCISSGKNPLAKFLLRRGAKPSVKDAGGLTVLERAMEMGAITDEELFIKLAESQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0084 788 Pfam Ankyrin repeats (3 copies) 690 759 IPR002110 GO:0005515
Lal2g0084 788 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Lal2g0084 788 SUPERFAMILY Ankyrin repeat 688 783 IPR036770 -
Lal2g0084 788 Pfam BAR domain of APPL family 8 231 - -
Lal2g0084 788 ProSiteProfiles PH domain profile. 301 435 IPR001849 -
Lal2g0084 788 Pfam PH domain 303 434 IPR001849 -
Lal2g0084 788 SUPERFAMILY ArfGap/RecO-like zinc finger 487 609 IPR037278 -
Lal2g0084 788 SMART PH_update 302 437 IPR001849 -
Lal2g0084 788 Gene3D Arf GTPase activating protein 479 615 IPR038508 -
Lal2g0084 788 CDD PH_ACAP 304 439 - -
Lal2g0084 788 ProSiteProfiles Ankyrin repeat region circular profile. 728 759 - -
Lal2g0084 788 SUPERFAMILY PH domain-like 302 445 - -
Lal2g0084 788 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Lal2g0084 788 ProSiteProfiles ARF GTPase-activating proteins domain profile. 484 616 IPR001164 GO:0005096
Lal2g0084 788 CDD ArfGap 488 603 - -
Lal2g0084 788 Pfam Putative GTPase activating protein for Arf 488 608 IPR001164 GO:0005096
Lal2g0084 788 CDD BAR_SFC_plant 16 217 IPR035670 -
Lal2g0084 788 ProSiteProfiles Ankyrin repeat profile. 695 727 IPR002110 GO:0005515
Lal2g0084 788 Gene3D - 623 783 IPR036770 -
Lal2g0084 788 PANTHER CENTAURIN/ARF 3 784 IPR045258 GO:0005096
Lal2g0084 788 Gene3D - 300 444 IPR011993 -
Lal2g0084 788 SUPERFAMILY BAR/IMD domain-like 8 324 IPR027267 -
Lal2g0084 788 ProSiteProfiles Ankyrin repeat profile. 728 760 IPR002110 GO:0005515
Lal2g0084 788 SMART ANK_2a 695 724 IPR002110 GO:0005515
Lal2g0084 788 SMART ANK_2a 728 757 IPR002110 GO:0005515
Lal2g0084 788 SMART arf_gap_3 484 616 IPR001164 GO:0005096
Lal2g0084 788 PRINTS HIV Rev interacting protein signature 496 515 IPR001164 GO:0005096
Lal2g0084 788 PRINTS HIV Rev interacting protein signature 515 532 IPR001164 GO:0005096
Lal2g0084 788 PRINTS HIV Rev interacting protein signature 538 559 IPR001164 GO:0005096
Lal2g0084 788 Coils Coil 229 249 - -
Lal2g0084 788 ProSiteProfiles Ankyrin repeat region circular profile. 695 726 - -
Lal2g0084 788 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0084 Lal-Chr2 500364 518586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0084 496 603 C2H2 Transcription Factor Family AT4G21160 41.284 1.44e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0084 K12489 - gmx:100796006 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0136 1 887762 897973 Lal2g0084 2 500364 518586 LSH