Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0082 ATGAACTCTCGATCAGGTAGGGCACCAGTGAGAAGTTATCGACGGAGGAAGACAGTTTTGGACATTGACCTTAACCATCTTCCATCTGCTGAGAATCGAGAGCAGGAGGGAACTTTAAATCAGTTTTTGCCTCAACAAGTTCATGAGTTACAAGGACTCTCAATTCAGTTAGGGATTGAACAAGATCATGGTGTCCTGCAACCGCATCCTGTACAACCGCCAACAATTGATGTCGATGCGTTTGATGATGATGTTATTGAGTCTACTCCAAGGGCTTTTGCTGAGGCTAAAAACAAAAACAGTTCGAGAGGAAATCGCAGGAGGACTATAGTTGATGTGGATTTAGAAGATCAGACAAGGGTAACAAACAGTAATTGCAACAAACGCAACAGAGTATCCCCAGGCCGACAAATTATTAACTGTGATCACTATGATCTTTTTATAAATCTGGAAGGCAGTAGCAGTCATAAGAGGAAAAATATGGCACCACCTGAACCTCCAAAAGAGCCTGTCTTCAACTGTCCAATATGTATTGGGCCGTTGGTAGAAGAGGTATCAACAAAGTGTGGTCACATATTTTGCAAGGCTTGCATCAAGACTGCAATTAGCGCTCAAAATAAATGTCCTACATGCAGAAAGAAGATTACTGTAAGAGAGCTTATACGGGTGTTCCTCCCATCAGCTAGTTGA 690 0.4232 MNSRSGRAPVRSYRRRKTVLDIDLNHLPSAENREQEGTLNQFLPQQVHELQGLSIQLGIEQDHGVLQPHPVQPPTIDVDAFDDDVIESTPRAFAEAKNKNSSRGNRRRTIVDVDLEDQTRVTNSNCNKRNRVSPGRQIINCDHYDLFINLEGSSSHKRKNMAPPEPPKEPVFNCPICIGPLVEEVSTKCGHIFCKACIKTAISAQNKCPTCRKKITVRELIRVFLPSAS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0082 229 Pfam Zinc finger, C3HC4 type (RING finger) 173 211 - -
Lal2g0082 229 PANTHER ELFLESS, ISOFORM B 2 228 - -
Lal2g0082 229 SMART ring_2 174 211 IPR001841 -
Lal2g0082 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 227 IPR013083 -
Lal2g0082 229 SUPERFAMILY RING/U-box 169 224 - -
Lal2g0082 229 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Lal2g0082 229 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0082 Lal-Chr2 489958 493522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0082 1 227 C3H Transcription Factor Family AT5G48655 47.368 1.82e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0082 K22651 - gmx:100792853 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0082 2 489958 493522 Lal9g0107 9 677168 681809 LSH