LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal2g0078	ATGTCTCATTCTCAACCACCGCACCATGACGACGTATGCAAGGCGAGTCCATCTCACGCTCCGGGAACAACTGAGCTGGCATTGTATTATAACAGAGAAGTGGCTGCATTGCCACCACCGCCACCGCCACCGCCACCTCTACCCAAAAGGATAACATGGACGGAAGAGGAACACAGGTTGTTTCTCGAAGGGATTAGTCGATATGGGAAGGGAAGTTGGAAGAAAATTTCACAAAATTGTCTTAAATCAAGAACACCAAGTCAAATTGCTAGTCATGCCCAGAAATATTTTCTTCGTCAAGGTAGTGCGGATAGAAAGAGAAAAAGCATTCATGACCAAACCCTAGAAATTGTTCAATCTTCTTCTCCAAGGAACACTGTTACAATGCACCAGCACCAGCAAGATTCATCAAGTCATCGCCATTTGAATTTGAATCTTAATCATCCTGTTATAATGCCAATTCAGCAAGATTCAACTCGCCACGATCGCAATCAAAATCATTCTGTTAAGAGATCGCCGCAGAAAGATTCAACTCACGATAATGGGAATGAAAATCATTCTGTTAAGAGATCGCTGCAGCAGGATTCAACTCATGATAGTGGGAATGAAAATCATTCTGTTATAAGGCATCTGCAGCAAGTTCCAGCTCATGATAATGGGAATGAAAACCATTCTGTTAAGAGATTGCCGCAGCAAGATTCAACTCATGATAGTGGGAATGAAAATCATTCTGTTACAAGGCATCTGCAGCAAGTTCCTGCTCATGATAATGGGAATGAAAACCATTCTGTTAAGAGATCGCCGCAGCAAGATTCAACTCACGATAATGGGAATGAAAATCATTCTGTTAAGAGATCACTGCAGCAGGATTCAACTCATGATAATGGGAATGAAAATCATTCTGTTGCAAGGCCTCTGCAGCAAGTTCCAGCTCATCACAGTAGGAACATTTCGCCTCCACCACATCATTTGTATATTGATATGATCATACAAAAATCTGATGAAGGCCATCTTGATATATTTGTGAAGGATTCTAATCAGGTCAAGGTACAGAGTGTTATAACCGTGCAAGCTTCTCCACATCATTTGGATCTTTCATCACAACAAATTCATATTCCCGACTTTTTTTCAGAAAATCATCCACCGCACAAATGCAGAGTTATGCTTAAGAACTTTGGAACACAACCCTAA	1191	0.4123	MSHSQPPHHDDVCKASPSHAPGTTELALYYNREVAALPPPPPPPPPLPKRITWTEEEHRLFLEGISRYGKGSWKKISQNCLKSRTPSQIASHAQKYFLRQGSADRKRKSIHDQTLEIVQSSSPRNTVTMHQHQQDSSSHRHLNLNLNHPVIMPIQQDSTRHDRNQNHSVKRSPQKDSTHDNGNENHSVKRSLQQDSTHDSGNENHSVIRHLQQVPAHDNGNENHSVKRLPQQDSTHDSGNENHSVTRHLQQVPAHDNGNENHSVKRSPQQDSTHDNGNENHSVKRSLQQDSTHDNGNENHSVARPLQQVPAHHSRNISPPPHHLYIDMIIQKSDEGHLDIFVKDSNQVKVQSVITVQASPHHLDLSSQQIHIPDFFSENHPPHKCRVMLKNFGTQP	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal2g0078	396	CDD	SANT	52	97	IPR001005	-
	Lal2g0078	396	SMART	sant	49	99	IPR001005	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	119	139	-	-
	Lal2g0078	396	ProSiteProfiles	Myb-like domain profile.	45	97	IPR001005	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	157	203	-	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	160	186	-	-
	Lal2g0078	396	ProSiteProfiles	SANT domain profile.	53	101	IPR017884	-
	Lal2g0078	396	PANTHER	TRANSCRIPTION FACTOR KUA1	49	191	-	-
	Lal2g0078	396	Gene3D	-	53	100	-	-
	Lal2g0078	396	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	49	100	IPR006447	GO:0003677
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	187	203	-	-
	Lal2g0078	396	SUPERFAMILY	Homeodomain-like	49	100	IPR009057	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lal2g0078	396	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	49	101	IPR017930	-
	Lal2g0078	396	Pfam	Myb-like DNA-binding domain	52	97	IPR001005	-
	Lal2g0078	396	PANTHER	TRANSCRIPTION FACTOR MYB1R1-LIKE	49	191	-	-
	Lal2g0078	396	MobiDBLite	consensus disorder prediction	216	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal2g0078	Lal-Chr2	466415	467679	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lal2g0078		Myb_DNA-binding	1.2e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal2g0078	-		-	lang:109352793	302.367