Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0072 ATGGGCAAGTCTAGCAAGAAATCTGCTACCAAAGTTGATGCTGTAGCTGTTCCACCTTCAAAGTCTGCCAAAAAGGGCAAGAGGCAGCCCGAAGATGAAATTGAAAAACAGGTGAGTGCAAAGAAGCAGAAGATAGAGGAGGTTACCCAGAAGCAAAAGAAGGAAGCGAAATTGCAAAAAAATAAGAAGATAAGCAGTTCAGATGATTCTTCATCGGATTCTGAAATCGAGAAACCTGCTGCCAAGGTTGTTGTTCCTTCAAAAAAGCAACCTGCTGCTGAGAAACCTAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCGGCAAAAAGTCAACCAGCTAAAAATGGTACCCTTGCAAAGAAAGGCAAGCCACCTCCAAGTTCCAGCTCGTCTGATGAATCATCAGATGATGACTCTGATGAGGATGAAGCTCCAAAGTCCAAGGTGGTTGCTGCTGCTGCTAAGAATGGGTCTGCTCCCACAAAGAAGACTCTGCAACCCAGTGAAAGCTCTGACTCTGATTCTGATGACAATTCTGATGAGGATGATGCAACTAAATCTGCCAAGAAATTGCCTGCTGTTTCTGGTAAGAATGTGCCTGCTAAGAAGGTTGAATCAGACTCATCTTCTGAAAGTAGCTCAGACGAGGACGATGATACAAAGCCTACTGTAACTGCTGTGTCCAAGGCTTCTGTTCCGAAGAAGAAAGATGACACCTCAGATTCAGATGATAGTAGTTCTGACGAGGACGATGAAATTGCTGCGAAGACTGTTTCCAAAGCCAAGGCCGTGCCTGTTTCTAAGCAGCCTGCAAAGAAGTCAAAGAGTAGTTCCGACGAGAGTGACGAAGAAGAGGATTCCTCGGATAGTGATGCTGAGAATAAGAAAAATGCTAAAACTTCTAATGGTAACAAGAAACCAGCATCCATTGTGAAGGCAGTGAAAAAGGTGTCTAGTGATAGCTCATCTGATGACGAGGAGGAGATGGACGTTGATGAGGATGATAGCTCTGATGAAAGTGATGATGAGCCTCAAAAGAAAAAGTATGTTAGTTTCACACCTTACTTATCACTGCAGCCTGTGAAAGACTCCAAGGAAAGCTCTGATGATAGTTCAGAGAGTTCAGAGGACTCGGAGGAGGAAAATGAGAAGGAACTCTCAAAAACTCCCCAGAAAAGTGTTAAGAATGTTGTGATGGTTGATGCCTCATCTGGAAAGAAAGCTCCTAAAACCCCGACCACACCAAAAGCAGATAATGGTGGAACAAAGTCACTATTTATTGCCAACCTCTCATATAGCGTGCAAAATTCTGATGTGGAAAATTTCTTCAAAGACTGTGGAGAGGTTGTTGATGTTCGTCTCGCTGTAGATGATGATGGGAGATTGAAAGGCTTTGGACATGTCGAGTTTGCAACATCTGAGGCAGCCCAAAATGCCCTCAAGTTGCATGAGCAAGAACTGCTAAATCGTCCCATTCGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACTCCAAACAGTGGGCCATACAGCGGTGGTGGAAGAGCCCAGTCTCAGACAGTGTTTGTTAGGGGTTTTGATAGATCCCTTGGAGAACAGGAGTTAAAATCTAGCCTGGAAGAGCATTTTGGTAACTGCGGACAGATTACAAGGATATCTGTGCCAAAAGATTATGATTCTGGTGAATTGAAGGGGTTTGCTTACTTGGACTTCACTGATGGCGATAGCTTGAGCAAAGCTCTGGAACTCCATGAATCTGAACTTGGAGGTTATACATTGACAGTGGATGAAGCCAAACCTAGAGATAATCAAGGTTCTGGTGGTGGTAGAGGTGCTGGTAGGAGTGGCGGTCGATTTGGTGGAAGGGGAGGTCGATTTGATGGAAGGGGCAGTGGTGGTCGATTTGGTGGTGGGAGAGGGGGTGGTGGTCGATTTGGTGGTGGCTTTGATGGTCGGGGGAGAGGACGCGGTGGTCGTGGAGGACCAAGTAGACCAAGTATTGCTGCGGAAGGGAAGAAGACTACTTTTGCTGATGATGAATAG 2076 0.4518 MGKSSKKSATKVDAVAVPPSKSAKKGKRQPEDEIEKQVSAKKQKIEEVTQKQKKEAKLQKNKKISSSDDSSSDSEIEKPAAKVVVPSKKQPAAEKPKVQKKESSSDDSSSESEDEKPAAKSQPAKNGTLAKKGKPPPSSSSSDESSDDDSDEDEAPKSKVVAAAAKNGSAPTKKTLQPSESSDSDSDDNSDEDDATKSAKKLPAVSGKNVPAKKVESDSSSESSSDEDDDTKPTVTAVSKASVPKKKDDTSDSDDSSSDEDDEIAAKTVSKAKAVPVSKQPAKKSKSSSDESDEEEDSSDSDAENKKNAKTSNGNKKPASIVKAVKKVSSDSSSDDEEEMDVDEDDSSDESDDEPQKKKYVSFTPYLSLQPVKDSKESSDDSSESSEDSEEENEKELSKTPQKSVKNVVMVDASSGKKAPKTPTTPKADNGGTKSLFIANLSYSVQNSDVENFFKDCGEVVDVRLAVDDDGRLKGFGHVEFATSEAAQNALKLHEQELLNRPIRLDLARERGAYTPNSGPYSGGGRAQSQTVFVRGFDRSLGEQELKSSLEEHFGNCGQITRISVPKDYDSGELKGFAYLDFTDGDSLSKALELHESELGGYTLTVDEAKPRDNQGSGGGRGAGRSGGRFGGRGGRFDGRGSGGRFGGGRGGGGRFGGGFDGRGRGRGGRGGPSRPSIAAEGKKTTFADDE 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0072 691 SUPERFAMILY RNA-binding domain, RBD 425 526 IPR035979 GO:0003676
Lal2g0072 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 510 IPR000504 GO:0003723
Lal2g0072 691 MobiDBLite consensus disorder prediction 1 431 - -
Lal2g0072 691 Gene3D - 372 526 IPR012677 -
Lal2g0072 691 Gene3D - 527 646 IPR012677 -
Lal2g0072 691 MobiDBLite consensus disorder prediction 93 120 - -
Lal2g0072 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 532 604 IPR000504 GO:0003723
Lal2g0072 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 504 IPR000504 GO:0003723
Lal2g0072 691 SMART rrm1_1 531 607 IPR000504 GO:0003723
Lal2g0072 691 SMART rrm1_1 435 506 IPR000504 GO:0003723
Lal2g0072 691 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 295 685 - -
Lal2g0072 691 Coils Coil 31 61 - -
Lal2g0072 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 530 611 IPR000504 GO:0003723
Lal2g0072 691 SUPERFAMILY RNA-binding domain, RBD 529 642 IPR035979 GO:0003676
Lal2g0072 691 CDD RRM1_NUCLs 435 511 IPR034349 -
Lal2g0072 691 MobiDBLite consensus disorder prediction 334 351 - -
Lal2g0072 691 MobiDBLite consensus disorder prediction 603 691 - -
Lal2g0072 691 CDD RRM2_NUCLs 531 609 IPR034350 -
Lal2g0072 691 MobiDBLite consensus disorder prediction 24 76 - -
Lal2g0072 691 PANTHER BNAA08G02930D PROTEIN 295 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0072 Lal-Chr2 409509 415181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0072 426 593 Eukaryotic Initiation Factors Gene Family AT4G34110 29.885 1.14e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0072 K11294 - ahf:112789008 436.417