Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0063 ATGTTGCTGCTTGAAGTAAATCACTTACTGTATTTTGATCATTTTGGTTTTTCTGCTTCTCTCAAGTTGAAGTCAATGGTTAACCTCTATGTAAATTATTTTCTTGTTTTGGTTCTTTTGTATCGCAGTCAAACATCTGAAGTTGAACCAATGGATTGTACAGCTGCGAGAAAGACTCAAAAGGCTGACCGAGAGAAGTTGAGGAGGGATCGGCTCAATGAACAGTTTGCAGAACTGAACAACATTTTAGACCCCGAACAGCCAAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAACTGCTGAATGACCTTTCTTCTCAAGTTAGCAAACTCAAGGACGAATATACTGCACTAAATGAAGAATCTCGTGAGCTGGCACAAGAGAAAAATGATCTCAAAGAAGAGAAGGCTTCTCTTAAGTTGGATATTGAGAACTTGAATAATCAGTATCAGCAGCGGCTCAGGACTGTGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCGTATCCGTATCCAATGCCAGTACCGGTCCCTCCCGGTCCAATTCCCATGCAGCCGTACCCTTACTTTTCATCCCCAACCCATGTTTCAACATATGTTCCTTATTTAGCTCCCAACACTGTTGTTGAACAACAATCCACCCAGTACATATCGCCACCAGTTCATCCGGGAGGTTGGTCCCACGTATCAAGCAAACAACACTCCAAACACAAGTCATCCAGGGAGAGCAGTGCTGAAAGAAGTCAGGCTTCTAATGAAGTTACTATGGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGATCAGCATTTATCTTCTGGACAAAGAAAGTCCAGCAAGTCGTCTAGGAAGGAAAACAGCTGTGCAGAAGGGAGTTCTCTAGGTAGGTCTACTTCATCTCATAGCATCCAGGACAGCTCATCAAGTAGTGTAGCTGGGAGCAGAAAAGCTAATGAATGA 981 0.4312 MLLLEVNHLLYFDHFGFSASLKLKSMVNLYVNYFLVLVLLYRSQTSEVEPMDCTAARKTQKADREKLRRDRLNEQFAELNNILDPEQPKNDKATILGDTIQLLNDLSSQVSKLKDEYTALNEESRELAQEKNDLKEEKASLKLDIENLNNQYQQRLRTVFPWTAMDHSVMMAPPSYPYPMPVPVPPGPIPMQPYPYFSSPTHVSTYVPYLAPNTVVEQQSTQYISPPVHPGGWSHVSSKQHSKHKSSRESSAERSQASNEVTMDLELKTPGSSADQHLSSGQRKSSKSSRKENSCAEGSSLGRSTSSHSIQDSSSSSVAGSRKANE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0063 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 106 IPR011598 GO:0046983
Lal2g0063 326 PANTHER TRANSCRIPTION FACTOR BHLH121 42 325 IPR044579 GO:0003700|GO:0055072
Lal2g0063 326 CDD bHLH_AtILR3_like 61 135 - -
Lal2g0063 326 Coils Coil 103 158 - -
Lal2g0063 326 MobiDBLite consensus disorder prediction 223 326 - -
Lal2g0063 326 Pfam Helix-loop-helix DNA-binding domain 57 106 IPR011598 GO:0046983
Lal2g0063 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 125 IPR036638 GO:0046983
Lal2g0063 326 Coils Coil 55 82 - -
Lal2g0063 326 SMART finulus 62 112 IPR011598 GO:0046983
Lal2g0063 326 MobiDBLite consensus disorder prediction 292 326 - -
Lal2g0063 326 MobiDBLite consensus disorder prediction 252 266 - -
Lal2g0063 326 PANTHER TRANSCRIPTION FACTOR BHLH121 42 325 - -
Lal2g0063 326 Gene3D - 55 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0063 Lal-Chr2 353371 356756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0063 21 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 54.610 2.05e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal2g0063 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0063 - - cam:101491902 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0063 2 353371 356756 Lal2g0063 2 353371 356756 ECH
Lal1g0110 1 735387 738811 Lal2g0063 2 353371 356756 ECH
Lal1g0110 1 735387 738811 Lal2g0063 2 353371 356756 LSH
Lal2g0063 2 353371 356756 Lal9g0086 9 553802 561462 LSH