Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0053 ATGGCTTTCTTCTTTATTTGTTTCTTCATCTTCTTTCTTGCAACATCTTCTGCTACTGCTTGTGATGATAGCTGTGTGCATCAAACCAAGGCTTCTCAGTTCTCCAAAGCCTCTGCTCTTTCATCTGGGGCATGTGGATATGGCTCCCTTGCACTTGGCTTAAGTAATGGACACCTTGCAGCTGCAGTCCCTTCCCTCTTCAGAGATGGAGCTGGTTGTGGTGCCTGTTTTCAGATAAGATGCAAGAACCCCACTTTATGCACAAAAGCAGGTACCACAGTGGTAGTGAGTGATCTTAATCGCAATAACCAAACAGACTTTGTCTTAAGCAGCAGGGCCTTCACGGCCATGGCTCAGAAAGGTATGGGCCAACAAATATTGAAGCTTGGCATTGTTGATATTGAATATGAGAGAATACCTTGTGATTACAAAAAACAGAATTTGGCAGTCCGTGTAGAAGAATCAAGCCAGAAACCAAACTACTTAGCAATTCAGTTTTTGTACCAAGGGGGTCAAACAGAGATAGTAGCCATTGATGTAGCCCGGGTTGGATCTTCAAACTGGAGCTTCATGAGCAGAAAACATGGGGCAGTGTGGGACACAAGCAGGGTCCCACAAGGTCCATTGCAATTCCGGATAGTGGTAACTGCAGGGTATGATGGGAAATGGATTTGGGCACAGAAGGTGTTACCTGCTGATTGGAAAACTGGGATGGTGTATGACTCTGGTGTTCAGATCACTGATATTGCACAACAGGGCTGTTCCCCCTGTCATCAAGGGAACTGGTCTTGA 792 0.4558 MAFFFICFFIFFLATSSATACDDSCVHQTKASQFSKASALSSGACGYGSLALGLSNGHLAAAVPSLFRDGAGCGACFQIRCKNPTLCTKAGTTVVVSDLNRNNQTDFVLSSRAFTAMAQKGMGQQILKLGIVDIEYERIPCDYKKQNLAVRVEESSQKPNYLAIQFLYQGGQTEIVAIDVARVGSSNWSFMSRKHGAVWDTSRVPQGPLQFRIVVTAGYDGKWIWAQKVLPADWKTGMVYDSGVQITDIAQQGCSPCHQGNWS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0053 263 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Lal2g0053 263 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Lal2g0053 263 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Lal2g0053 263 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Lal2g0053 263 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lal2g0053 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Lal2g0053 263 PANTHER EXPANSIN-B3 7 259 - -
Lal2g0053 263 SUPERFAMILY PHL pollen allergen 147 242 IPR036749 -
Lal2g0053 263 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Lal2g0053 263 PANTHER EXPANSIN-LIKE A1-RELATED 7 259 - -
Lal2g0053 263 Gene3D - 143 247 IPR036749 -
Lal2g0053 263 PRINTS Major pollen allergen Lol pI signature 61 72 IPR005795 GO:0005576|GO:0019953
Lal2g0053 263 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Lal2g0053 263 PRINTS Major pollen allergen Lol pI signature 151 166 IPR005795 GO:0005576|GO:0019953
Lal2g0053 263 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Lal2g0053 263 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Lal2g0053 263 SUPERFAMILY Barwin-like endoglucanases 12 144 IPR036908 -
Lal2g0053 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 242 IPR007117 -
Lal2g0053 263 Gene3D - 12 142 IPR036908 -
Lal2g0053 263 SMART dpbb_1 60 136 IPR007112 -
Lal2g0053 263 Pfam Lytic transglycolase 61 136 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0053 Lal-Chr2 321990 326061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0053 18 263 Expansin Gene Family AT4G38400 66.129 9.85e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0053 - - gmx:100819849 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0053 2 321990 326061 Lal2g0053 2 321990 326061 ECH