LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal2g0036	ATGATGAGCGTGAATGGCGGTGGTGGAGTGGTGGCGCCGTTTCTGAGCAAGACGTATGAAATGGTGGATGATTCATCAACGAACACAGTTGTTTCGTGGGGAGATAATAACAATACATTCATCGTTTGGGATGTGTCACAACTCTCATCTCTTATCTTACCCAAATATTTCAAACATAACAACTTCTCTAGCTTCGTTCGCCAATTAAACACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGGTTTTTAAGGGGTCAAAAACAACTTTTGAAGAGTATCAGTAGGCGTAAATCTGCTCATGTAAATGGAAATAGTCAACAACCATCTCAGGTGCAGAATTCACCTGTTGGGGTGTGCGTTGAAGTTGGAAAGTTTGGGCTTGAAGAAGAGGTCGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAGCAAACAACTGATAACCAATTACAAACTGTTGGGCAACGTATGCAGGTTATGGAACAGCGTCAGCAGCAGATGATGTCATTCCTAGCTAAGGCCATGCATAGTCCAGGCTTCATGGCTCAATTTGTACATCAGCAGAATGAAAGTAATAGACACCTCACTGTAGGTAGTAAAAAAAGGAGGCTCCAGAGGCAGGAAGAGGATACTCTAGCCAGCAAGAATGTTCATATTGCTCGTGATGGACGTGTTGTCAAGTACCAGCCTTCTATAAATGAGGCAGCAAAAGCATTCTTTAAGATATTGCAAATGAACAATTCTACCATGATGGAATCATCAATTAAGAACCCTGATGCTTTCCTTATTGATGATGTTCCTATGGCCATTCCAGTAGATAGCAGCAGTTCGACCACTCAGGTTTCTAGTGTAACCCTTTCTGAGGTTCCACCCACTTCTGGGCAGTCATATATGGCAGTAGAATCACAATTTCCTGTCAATTGTATGCTAAATAGCACAACTGAGGTGCAATCTTCACCTGCTGTGTTGACTGATTGTGTCAAAGCAGCTGAAGTTCCCCACTTAACTGCGCGTAATTGCCAAGACAATGGTTTGGATTTTTGTGAATTACAAGGGATTGAGACAGGAAGCAGTTTCATGAATCCGGGTCTGAACTTTGTGGGGCCTGACACTAGGAATGCTAGGGAGATAGATATGATGTCAACTGTTTTAGATGGGACACTGTCTGTAGAAAGTGATGCTTTATCACCTGATGCAGATGGAGTTTCTAAGCTTCCAGGAATTAATGATGAATTCTGGGAAATGATTTTGAGTTCGAGCCCAGTTAGGGGAGATACAGATGAAGTTACATGTAGCTCCTTGGGATGTGGTTTAACCCAAGACCATGAATTATCATCAGAAAAGGAGATTCAACAGGAAAATACGGACAAGAAACCTCAAATTGACCATCTTACTCAAAAGATGGGACTTCTTGCATCAAGGTCTTAA	1476	0.4201	MMSVNGGGGVVAPFLSKTYEMVDDSSTNTVVSWGDNNNTFIVWDVSQLSSLILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSAHVNGNSQQPSQVQNSPVGVCVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRMQVMEQRQQQMMSFLAKAMHSPGFMAQFVHQQNESNRHLTVGSKKRRLQRQEEDTLASKNVHIARDGRVVKYQPSINEAAKAFFKILQMNNSTMMESSIKNPDAFLIDDVPMAIPVDSSSSTTQVSSVTLSEVPPTSGQSYMAVESQFPVNCMLNSTTEVQSSPAVLTDCVKAAEVPHLTARNCQDNGLDFCELQGIETGSSFMNPGLNFVGPDTRNAREIDMMSTVLDGTLSVESDALSPDADGVSKLPGINDEFWEMILSSSPVRGDTDEVTCSSLGCGLTQDHELSSEKEIQQENTDKKPQIDHLTQKMGLLASRS	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal2g0036	491	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	10	465	IPR027725	-
	Lal2g0036	491	Coils	Coil	131	158	-	-
	Lal2g0036	491	MobiDBLite	consensus disorder prediction	459	479	-	-
	Lal2g0036	491	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	Gene3D	-	9	104	IPR036388	-
	Lal2g0036	491	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE	10	465	-	-
	Lal2g0036	491	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	SUPERFAMILY	"Winged helix" DNA-binding domain	11	103	IPR036390	-
	Lal2g0036	491	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal2g0036	491	MobiDBLite	consensus disorder prediction	459	491	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal2g0036	Lal-Chr2	228172	230580	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal2g0036	11	491	HSF	AT5G16820	49.187	1.23e-139	409

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal2g0036		HSF_DNA-bind	5.6e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal2g0036	K09419		-	gmx:100793665	576.244