Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0030 ATGGCTCTCAAGGCTTCTGATAATCCAAATTTGGCACATGATTTTGACGATGAAGATGGCCCATTAACTTTTAAACGATACACATCGTCTAAGAAAAAACAATTGCATTCACAATTGACAAAGTCAACTTCGCCATCTTCAAATGGCCAACCTTCTAGCAACCACAAAGGTAATACTGTCCCATCTGCTGTAGGAAACTCAAAAGCATCCACTTCACTAGCAAATTCAAATTCCCCAAAGCCTGTTTTGGATCAAAAAATTCCCATTCATATTAAGGGGGAAACAAAATCTATCAAACATAGTACTAAAGATTCAGAGGATGAGGATCATAATAAACCATTCAGTGCTAGGTTGAAGGTTAACTCTAATAATGATAACAAATCAACTCCTGTTGTTGTGAAGAAATCTTATGAAGACTCCAATGATGATGGTGCTATGCCTTTGTCAGCAAAGTTGTTTCGGAATTCTAATGCCAGAGCATCTTGCGGTAATTATGATGACTCTGATGTGAAGAAGCCTATTTCAAAAGTTCAGAAAGAGCGGCAAAATGGTTCTAGTGCTAGCAATAAACATGAAAAGCCATCTACACTGCTAGCTAAGAGACCAATAGATAATAGTAATTCCATGCACACTTCAGTTAAGAAGTTGAAGGTCTCAGATCCAGCTGGATCAATCAAAACTGAACAAGTCTCTATGAAATGTGAGCCGAAGGTGGATGATGACGATGATGGTATTCCTATTTCCCAGAGAATAAAGAAGCCACTCACATCACCTGATAAATCATCTTCCGTAAATAGGAAGTTGACTATGTCAGCTGATAAATCATCTTCCATGAAGAACAGTTTGACAAAGGTTACCAAAGTTAACAAGGCTGGTAAAACATCTTTTAAGAAACAGCCACAGAAGTTAAAAAAATCAGGCAAGGGTTCAGATTATTCCAAATCTACGAAACTTCTTCCGAGTTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTTCCTCCTCCTTACCAGACCCATGGGGTAAAGATACTCTATAAGGGGAAACCGGTTGATCTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGACACAGAATACATGCAGAAAGATAAGTTCAAAGAAAATTTCTGGAATGACTGGCGTAAGTTGCTAGGAAGAAATCATGTAATTCACAACTTGAAAGATTGCGACTTTACCCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAAAAACAAATGACTACAGAAGAGAAGAAGGCCTTGAAGGAGGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTCGATGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAACATCCCAAGATGGGAAAATTGAAAAGACGCATTTGTCCAGGTGATATCGTAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCTTGGTGAAAGTGGCACATGCATCCTTGGCAGATGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTACTGGAGTGACCCTATCAATCCCAAGTTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCCCTGAAGGGGCAAAGCGACAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGATTATATAGCGAACATTAGGGCTGCATACACAAAAGATTTTACAAATAAAGATATTACAAAGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGCACATTAAAAGTAGAGAATGTGACGAGAGAAGCCCCCAACAAGTTGAAGGGACCATGGTTCCTTTTTGTTTCAATACAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAACGCAATTTTAAAGTTCCAAAAAGAAAAACGCCCTGGTGATGACCTTTTTGACATGCTGGATACAAGTAAATTAAATGCTCATTTGAAGGAACTCATGCCCGGCCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGACATGTTGAATAAGGGAACTAAAGGTGGAGATGTTGGTGAAAATATTGTTGTTTATCAGAAAGCTAACAAACAGGTTGCAATCATCTGTAATCATCAACGCAGTGTTTCAAAATCTCACAGTGCACAAATGTTGAGGTTAAATGAAAAGATCGACGGACTTAAGGCTGTTCTGAAGGAGCTGAAAACAGATTTGGACAGGGCAAAGAAAGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGGCAAAACGGAACTTAAATCCTAAAGCGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACTAAAGACGACCTAAAGACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGATCCTAGGATTACAGTTGCCTGGTGTAAGCGGCATGAGGTCCCTATTGAAAAGTTAATGGACTATGTTTCTCTCCAACTAAGAAAAACAACCAACTGTATTGATGGCAAGAGGCATGGTGCTTCCCACCATAATATATTAATATTTTTTTTGTTATCCGCAATAATCTCAATAAAAAGGGATAGAGGTCCAATTTTCAACAAATCACTGCTGGCAAAATTTAGTTGGGCAATGGATAATCAAAATGACAGTTACTCTGAGCAATATAAGCATCAACTATTGTTGTCATCTAATCTCATAGAGAATAGTAACATGGAAATATGGTTGATCCTCATTATTGTATGCCTTGTTCTCTTGATCATTCTCAAAAGTGTAGGAAACCTTCTATTCCGCCATCCTCCTCTCCCTCCGGGACCTGCCAAATTCCCCATCATAGGAAACATCACATTGTTACAATTTGTTAAAGATCCTGAAACCCTTCTCCGGAACCTTCAAGCCAAATATGGTCCAATCTTCACTCTTCACATCGGTTCTCAGACTGCCATTTTCATTGCTGATCGCTTCCTTGCTCATCAAGCTTTGATACAAAATGGTACTAACTTCGCTGATCGCCCTAAGCCTGTTCCTACCAATAAGATCATCAGCAGCAACCAGCATGACATTGTTTTCAGCTTCTATGGCCCCTTATGGCGCCTCCTTAGGCGCAACCTCACTTCAAGAATCCTTCATCCCTCTCAGTACAAGTCCTATTCACATGCACGCAAATGGGCGTTACACCTACTTCTTGATCGCTTTAAATCTGATGTAGATGCAGACAACTCCATTAATTACATTGAACATTTTCGGTATGGCATGTTTTGCTTGTTAGTTTTCATGTGTTTAGGTGATAAACTTGATGAGAAGCAAATACGAGAAATCGAGGACACTCAACGACGCATGCTTGTTAGAATTGGCAGATACAGTGTCCTGAATTTATGGCCACCAATCACTACGATATTGTTCAGGAAACGATTGCAGGAATTCTTACAGCTACGAAGAGACCAAGAAGCAGCATTGATTCCTCATATCAATGCTAGAAGGAAAGCGAGGGTAGGCAATAGTGACAAAGAGAAGAATGAATCAGATAAATATATTGAGTCATATGTTGACACTTTGTTGGATTTGGAACTATTGGAGGAAGGGAGCAAGCTGGATAACAGTAAAATTTGCACCTTGTGCGCAGAGTTTTTGAACGCTGGAACAGATACAACTGCAACAGCATTGGAGTGGATCATGGCAAATTTGGTGAAATACCAAGATATCCAAGAAAGAATTGTGGAGGAAATAAAAGGGGTGATGGGTGACAGAGAGGATAAGGAAGTGAAAGAGGAAGATTTGCAACAAATGCCATATCTCAAGGCTGTGATTCTGGAGGGTTTAAGGCTTCACCCACCAGTACACTTTCTGGCTCCTCATAGAGTAACAGAAGATGCTGTTTTGAATGGTTATTCAGTGCCATCATCTGCTACAGTATATTTCATAGTGGCAGAGATAGGGAGAGACCCAACAGCATGGGATGACCCAATGTCCTTTAAGCCAGAGAGGTTCATGTTCAAGAATGATGGAGATGAAAATGGAGACACAACTTTTGATATAATGGGAAGTAAAGAGATAAAGATGTTACCATTTGGGGCAGGGAGGAGAATGTGCCCTGGCTATGCATTAGGAATCTTGCACTTGGAGTACTTTGTGGCCAATTTTGTTTGGAATTTTCAGTGGAAAACCATTGGTGGAGATGACATTGATATGTCAGAGAAGCTGCAATTCACATCAGTGATGAAGAATCCTTTAAAGGTTCATTTAGTACCTAGGCTTTGA 4401 0.3967 MALKASDNPNLAHDFDDEDGPLTFKRYTSSKKKQLHSQLTKSTSPSSNGQPSSNHKGNTVPSAVGNSKASTSLANSNSPKPVLDQKIPIHIKGETKSIKHSTKDSEDEDHNKPFSARLKVNSNNDNKSTPVVVKKSYEDSNDDGAMPLSAKLFRNSNARASCGNYDDSDVKKPISKVQKERQNGSSASNKHEKPSTLLAKRPIDNSNSMHTSVKKLKVSDPAGSIKTEQVSMKCEPKVDDDDDGIPISQRIKKPLTSPDKSSSVNRKLTMSADKSSSMKNSLTKVTKVNKAGKTSFKKQPQKLKKSGKGSDYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYQTHGVKILYKGKPVDLTPEQEEVATMYAVMRDTEYMQKDKFKENFWNDWRKLLGRNHVIHNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPGDIVINIGKDAPIPECPILGESGTCILGRWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIANIRAAYTKDFTNKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKGPWFLFVSIQFNFLGKDSIKYENTVEVELPVYNAILKFQKEKRPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKGTKGGDVGENIVVYQKANKQVAIICNHQRSVSKSHSAQMLRLNEKIDGLKAVLKELKTDLDRAKKGKSPLKSSDGKAKRNLNPKALEKKISQTNAKIEKMQRDMKTKDDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKLMDYVSLQLRKTTNCIDGKRHGASHHNILIFFLLSAIISIKRDRGPIFNKSLLAKFSWAMDNQNDSYSEQYKHQLLLSSNLIENSNMEIWLILIIVCLVLLIILKSVGNLLFRHPPLPPGPAKFPIIGNITLLQFVKDPETLLRNLQAKYGPIFTLHIGSQTAIFIADRFLAHQALIQNGTNFADRPKPVPTNKIISSNQHDIVFSFYGPLWRLLRRNLTSRILHPSQYKSYSHARKWALHLLLDRFKSDVDADNSINYIEHFRYGMFCLLVFMCLGDKLDEKQIREIEDTQRRMLVRIGRYSVLNLWPPITTILFRKRLQEFLQLRRDQEAALIPHINARRKARVGNSDKEKNESDKYIESYVDTLLDLELLEEGSKLDNSKICTLCAEFLNAGTDTTATALEWIMANLVKYQDIQERIVEEIKGVMGDREDKEVKEEDLQQMPYLKAVILEGLRLHPPVHFLAPHRVTEDAVLNGYSVPSSATVYFIVAEIGRDPTAWDDPMSFKPERFMFKNDGDENGDTTFDIMGSKEIKMLPFGAGRRMCPGYALGILHLEYFVANFVWNFQWKTIGGDDIDMSEKLQFTSVMKNPLKVHLVPRL 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0030 1466 Gene3D Topoisomerase I; Chain A, domain 3 549 707 IPR014711 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 834 852 IPR018521 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 Gene3D DNA Topoisomerase I, domain 2 324 546 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal2g0030 1466 Pfam C-terminal topoisomerase domain 820 867 IPR025834 -
Lal2g0030 1466 SUPERFAMILY Cytochrome P450 984 1465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lal2g0030 1466 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 326 548 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal2g0030 1466 MobiDBLite consensus disorder prediction 200 214 - -
Lal2g0030 1466 Pfam Cytochrome P450 984 1459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lal2g0030 1466 MobiDBLite consensus disorder prediction 254 296 - -
Lal2g0030 1466 SMART topeu 468 861 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal2g0030 1466 PANTHER DNA TOPOISOMERASE I 89 870 - -
Lal2g0030 1466 MobiDBLite consensus disorder prediction 788 809 - -
Lal2g0030 1466 Gene3D - 708 877 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal2g0030 1466 Coils Coil 764 791 - -
Lal2g0030 1466 MobiDBLite consensus disorder prediction 1 325 - -
Lal2g0030 1466 MobiDBLite consensus disorder prediction 116 135 - -
Lal2g0030 1466 CDD Topo_IB_C 555 758 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 SUPERFAMILY DNA breaking-rejoining enzymes 549 870 IPR011010 GO:0003677
Lal2g0030 1466 MobiDBLite consensus disorder prediction 87 115 - -
Lal2g0030 1466 CDD Topoisomer_IB_N 328 547 - -
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 468 477 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 591 610 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 614 628 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 646 662 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 704 718 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PRINTS Eukaryotic DNA topoisomerase I signature 841 852 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 PANTHER DNA TOPOISOMERASE I 89 870 - -
Lal2g0030 1466 Gene3D Cytochrome P450 979 1466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lal2g0030 1466 MobiDBLite consensus disorder prediction 33 82 - -
Lal2g0030 1466 Gene3D - 344 427 IPR013034 GO:0003917|GO:0006265
Lal2g0030 1466 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 328 546 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 MobiDBLite consensus disorder prediction 179 193 - -
Lal2g0030 1466 MobiDBLite consensus disorder prediction 10 26 - -
Lal2g0030 1466 Pfam Eukaryotic DNA topoisomerase I, catalytic core 549 784 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lal2g0030 1466 MobiDBLite consensus disorder prediction 232 248 - -
Lal2g0030 1466 Coils Coil 417 445 - -
Lal2g0030 1466 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1404 1413 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0030 Lal-Chr2 192035 204770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0030 953 1465 Cytochrome P450 AT1G64940 53.920 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0030 K03163 - gmx:100799837 1270.76