Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0011 ATGGTAAGCATGCAGGGAAATATATTCTTAACACTGTTACTACTGTCCTCCTCAATTTTCTCATTAGCCACATCAAGAAGATCAAGATCATCCAGCAACATAGGTTGGTGGTGCAACCAAACTCCACACCCTGAGCCATGCAAATACTATCTGAGGCAAAAGCAACAACACCGTTACATACTCAAACACAAAGCCAAGTTCAGAGAAGTTCTAGTTCACTTGGCCTTACAGAGATCACTCATCATGCAAACACAAGCACGTGAATTCAGACAAAACTCAATGACAATGAAGCAGAAACCCGTATTAGATGTTTGTTTGAAACTCTATGACAACACGGTCTTCCATCTCAATCGTACCCTACTAGGCCTTAAAGACAGAAAAAGGTGTTCATCTTTTGATGCACAAACATGGCTTAGCACTGCTCTAACAAACATTGAAACATGTAGAACTGAGGCATTGGAATTTAGTGTACCAGATTTCATAATTCCCGCACCGAACAGCAATGTGACTGAGATAATAAGCAATAGCTTAGCAGTAAATTATGGTTTCACAAAAGAAGAAGCAAGTCATTACACAAAAGATAATGAAGTAGATGGGTTTCCAAATTGGATTTGGAGGCATGAGAGGAAGCTGTTGCAGTCTTCATCAATAAAGCCAAATCTTGTGGTAGCTAAAGATGGTTCTGGACATTTCAAGACAGTGCAAGCTGCTATCAATGCAGCAGCAAGGAGAAGAAGCAAGACCAGGTTTGTGATAAGAGTGAAGAGAGGAGTATATAGAGAGAATATTGAGGTTGATAAGTCAAATGATAACATTATGCTGGTTGGGGATGGAATGAGATATACAATTATCACAAGTGCCAGAAGCGTTCAAAATGGCTTCACTACCTATAGCTCTGCAACTGCAGGAATTGATGGTCTTCACTTTATTGCACGTGACATTACCTTCAAGAACACTGCTGGTCCTAAGAAGGGTCAAGCAGTGGCACTGAGATCAGCCTCTGACCTGTCCGTATTCTACCACTGTTCAATTGAAGGTTACCAAGACACCCTCATGGTTCATGCACAGCGTCAATTCTACAAAGGTTGCTACATATATGGCACTGTTGATTTCATTTTTGGGAATGCTGCAGTAGTTTTTCAAAACTGTGTGATTCTTGTAAGAAGACCATTAAATGGTCAAGCAAACATGATCACTGCCCAAGGTAGAGGTGACCCATTTCAAAACACAGGGATCTCAATCCACAACTCTCAAATAAGGGCTGCACCAGACCTTAAACCTGTTGTTAACAAATTCAACACCTTCTTGGGTAGGCCTTGGCAGCAATATTCAAGAGTAGTTGTTATGAAGAGTTATATGGATACCTTGGTGGACCCAATGGGTTGGTCTCCATGGGGAGATACTAATTTTGCTCAGAAAACATTGTACTTTGGAGAATACAAGAACTTTGGGCCAGGCTCATCCACAAGGAACAGAGTAAGATGGTCTGGTTATCATGTTATAAGAACTTCAACTCAGGCATCAACCTACACTGTTGCTTCACTCCTTGCTGGACAAACATGGTTGCCTTCCACTGGCATTCCATTTACTCCTGGCCTTTAA 1602 0.4126 MVSMQGNIFLTLLLLSSSIFSLATSRRSRSSSNIGWWCNQTPHPEPCKYYLRQKQQHRYILKHKAKFREVLVHLALQRSLIMQTQAREFRQNSMTMKQKPVLDVCLKLYDNTVFHLNRTLLGLKDRKRCSSFDAQTWLSTALTNIETCRTEALEFSVPDFIIPAPNSNVTEIISNSLAVNYGFTKEEASHYTKDNEVDGFPNWIWRHERKLLQSSSIKPNLVVAKDGSGHFKTVQAAINAAARRRSKTRFVIRVKRGVYRENIEVDKSNDNIMLVGDGMRYTIITSARSVQNGFTTYSSATAGIDGLHFIARDITFKNTAGPKKGQAVALRSASDLSVFYHCSIEGYQDTLMVHAQRQFYKGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLKPVVNKFNTFLGRPWQQYSRVVVMKSYMDTLVDPMGWSPWGDTNFAQKTLYFGEYKNFGPGSSTRNRVRWSGYHVIRTSTQASTYTVASLLAGQTWLPSTGIPFTPGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0011 533 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Lal2g0011 533 Pfam Pectinesterase 220 518 IPR000070 GO:0030599|GO:0042545
Lal2g0011 533 PANTHER PECTINESTERASE 5 532 - -
Lal2g0011 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Lal2g0011 533 CDD PMEI-like_3 36 185 - -
Lal2g0011 533 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 181 IPR006501 GO:0004857
Lal2g0011 533 SMART PMEI_2 29 179 IPR006501 GO:0004857
Lal2g0011 533 Pfam Plant invertase/pectin methylesterase inhibitor 34 178 IPR006501 GO:0004857
Lal2g0011 533 Gene3D - 213 533 IPR012334 -
Lal2g0011 533 SUPERFAMILY Pectin lyase-like 216 532 IPR011050 -
Lal2g0011 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 182 IPR035513 -
Lal2g0011 533 PANTHER PECTINESTERASE 5 532 - -
Lal2g0011 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0011 Lal-Chr2 69824 78655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0011 31 533 Carbohydrate Esterase AT3G47400 57.670 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0011 K01051 - gmx:100816908 794.267