Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0002 ATGGGGAGAGGAAAGATCGAAATAAAAAGGATAGAGAATACAACGAATAGGCAAGTAACATTCTGCAAGAGAAGAAATGGGCTTCTCAAGAAAGCGTATGAACTATCGGTGCTGTGTGATGCTGAGGTTGCCCTCATCGTCTTCTCTAGTCGTGGTCGTCTATATGAGTATTCTAACAACAAGCGTTGGAGGTCAGAGACTCACACTTTCCATTTACCCATTGGAGAGTGCACAATTACTTTGGAGGATGTCGCTTATCAATTGGGATTGCCCATTGATGGAGAAGTTGTCACTAGAGCAACAAGCATGGATTGA 315 0.4317 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNKRWRSETHTFHLPIGECTITLEDVAYQLGLPIDGEVVTRATSMD 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0002 104 PANTHER MADS BOX PROTEIN 1 61 - -
Lal2g0002 104 Pfam Plant mobile domain 61 100 IPR019557 -
Lal2g0002 104 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Lal2g0002 104 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal2g0002 104 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 61 - -
Lal2g0002 104 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Lal2g0002 104 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0002 Lal-Chr2 17212 18807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0002 1 60 MADS-box Gene Family AT4G09960 95.000 1.98e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal2g0002 SRF-TF 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0002 K09264 - pop:7475776 122.864