Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1185 ATGAAATATACTTTGTGGACAGATATGGCTGGAGGCGTTATTCAACAATTATTGAGGAGAAAACTCCAATCTCAATCTACCAGCACTTCCTTTTTGTCATCCATCATTGCGAAGAAAGATGATGCTGGGTCTAATAGCAGCAGGTCCTTAAGAGCACTTGCGTTAATTGGTGTTGGCATGTCAGGGTTTCTGAGTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCACGGTCTTGCTTGTGCAAGCTATCCATGGCCTCACGAAGGCATCCTCAGTTCATATGACCATGCTTCGATTCGTCGTGGACATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCTATGGGTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTTAAGGCTATGGCTGCTGAAATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTATTTGCCCTTCTGACCGGTTATCGTGACCCACCTGCTGGTGTTTCGATTAGAGAGGGACTCCATTATAATCCTTATTTTCCTGGTGGAGCAATCGCCATGCCTAAAATGCTTAATGATGGTGCTGTCGAATATGAAGATGGTACCCCGGCAACAGAAGCTCAGATGGGGAAAGATATTGTGTCATTCTTAACTTGGGCCGCGGAACCTGAGATGGAAGAGAGAAAACTGATGGGTTTTAAATGGATTTTTGTACTGTCACTGGCACTACTTCAAGCTGCATATTACCGTCGCTTGAGATGGTCGGTTCTAAAATCCCGCAAGCTGGTTCTTGATGTTGTCAACTAG 948 0.4473 MKYTLWTDMAGGVIQQLLRRKLQSQSTSTSFLSSIIAKKDDAGSNSSRSLRALALIGVGMSGFLSFATTASADEAEHGLACASYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMGLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDIVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1185 315 PRINTS Cytochrome C1 signature 84 103 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 104 123 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 149 169 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 182 206 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 220 231 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 231 250 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 251 270 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PRINTS Cytochrome C1 signature 270 285 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 ProSiteProfiles Cytochrome c family profile. 98 205 IPR009056 GO:0009055|GO:0020037
Lal25g1185 315 SUPERFAMILY Cytochrome c 79 269 IPR036909 GO:0009055|GO:0020037
Lal25g1185 315 PANTHER CYTOCHROME C1 13 315 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 270 314 IPR021157 -
Lal25g1185 315 Pfam Cytochrome C1 family 86 302 IPR002326 GO:0009055|GO:0020037
Lal25g1185 315 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 13 315 - -
Lal25g1185 315 Gene3D - 271 314 - -
Lal25g1185 315 Gene3D - 75 270 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1185 Lal-Chr25 15367617 15373506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1185 9 315 Chloroplast and Mitochondria Gene Families AT3G27240 85.761 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1185 K00413 - gmx:100789781 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1185 25 15367617 15373506 Lal25g1185 25 15367617 15373506 ECH