Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1182 ATGCCGGAGGAAACAACGCCGATCGACTACGTCATGGAGGCTGCTTCCGGTCCTCACTTCTCCGGCCTCCGTCTTGACGGCCTCCTCTCTTCTCCACCTTCTTCTCCTGCTCATCATTTCTCTTTTTCTTCTCTTCCAATTCAACCCTTCATCATAGGAGTTTCTGGAGGTACTGCTTCAGGGAAGACTACAGTGTGCGATATGATCATTCAGCAACTCCACGATCATCGCGTTATACTCGTTAATCAGGATTCATTTTATCGTGGTTTAACTCCTGATGAATTGAAGCGTGTTCAGGAGTACAATTTTGATCATCCTGATGCTTTTGACACTGAGCAGATGCTAGAGTGTGTGGGAAAGTTGATAAGCGGACAAAGCGTCCAAGTCCCTATTTATGACTTTAAGAATCATCAGCGATCTTCTGAAAATTTTCGGCAGGTCAATGCTTCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCATGACCAAGAAGTACGGGATCTGATGAACATGAAGATCTTTGTTGATGCAGATGCTGATGTGAGGCTTGCTCGTAGGATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCGAAGTTTGTTAAGCCAGCCTTTGATGATTTTGTTTTACCATCAAAGAAGTATGCTGATGTGATCATTCCTCGAGGAGGCGATAATCATGTTGCTATTGATTTGATTGTGCAACATATCCGCACAAAGCTTGGTCAACATGACCTATGCAAAATATATCCCAATATTTATGTTATTCACTCAACATTCCAGATAAGAGGGATGCATACATTGATTCGTGACCAAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGACTGGTTGTTGAGCATGGCCTAGGTCATCTCCCATTCACTGAAAAGCAAGTGGTTACTCCAACAGGGTCTGTCTATTCCGGTGTTGATTTCTGCAAGAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGCGAGAGCATGGAAAATGCACTTCGTACATGTTGTAAAGGCATTAAAATTGGAAAGATTCTGATTCATCGGGATGGAGACAATGGGAAACAGCTTATATATGAGAAGCTTCCGAAGGATATTTCAGAACGGCACGTCTTGCTTCTTGACCCTGTCCTTGCTACAGGTAACTCTGCCAACCAAGCAATTGAGTTACTCATTCAGAAAGGAGTTCCAGAATCCCACATTATATTCCTCAATCTCATTTCTGCTCCAGAGGGAATTCATTGTGTCTGTAAAAGGTTTCCATCATTGAAAATTGTGACATCTGAGATTGATGTCGCATTAAATGAAGAGTATCGTGTTATCCCCGGATTAGGCGAGTTTGGCGATCGCTACTTCGGCACTGATGATTGA 1413 0.4239 MPEETTPIDYVMEAASGPHFSGLRLDGLLSSPPSSPAHHFSFSSLPIQPFIIGVSGGTASGKTTVCDMIIQQLHDHRVILVNQDSFYRGLTPDELKRVQEYNFDHPDAFDTEQMLECVGKLISGQSVQVPIYDFKNHQRSSENFRQVNASDVIILEGILVFHDQEVRDLMNMKIFVDADADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNIYVIHSTFQIRGMHTLIRDQDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYSGVDFCKKLCGVSIVRSGESMENALRTCCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEYRVIPGLGEFGDRYFGTDD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1182 470 CDD UMPK 51 249 IPR000764 -
Lal25g1182 470 PANTHER URIDINE KINASE 18 467 - -
Lal25g1182 470 CDD PRTases_typeI 326 441 IPR000836 -
Lal25g1182 470 SUPERFAMILY PRTase-like 252 469 IPR029057 -
Lal25g1182 470 Pfam Phosphoribulokinase / Uridine kinase family 51 237 IPR006083 GO:0005524|GO:0016301
Lal25g1182 470 TIGRFAM udk: uridine kinase 50 249 IPR000764 -
Lal25g1182 470 Pfam Uracil phosphoribosyltransferase 267 468 - -
Lal25g1182 470 Gene3D - 47 252 IPR027417 -
Lal25g1182 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 242 IPR027417 -
Lal25g1182 470 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 18 467 IPR029930 GO:0004849|GO:0044206
Lal25g1182 470 Gene3D - 253 468 IPR029057 -
Lal25g1182 470 PRINTS Uridine kinase signature 49 66 - -
Lal25g1182 470 PRINTS Uridine kinase signature 79 90 - -
Lal25g1182 470 PRINTS Uridine kinase signature 124 139 - -
Lal25g1182 470 PRINTS Uridine kinase signature 181 191 - -
Lal25g1182 470 PRINTS Uridine kinase signature 195 206 - -
Lal25g1182 470 PRINTS Uridine kinase signature 217 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1182 Lal-Chr25 15333162 15342890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1182 1 470 PRT Gene Family AT5G40870 84.679 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1182 K00876 - gmx:100780005 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1182 25 15333162 15342890 Lal25g1182 25 15333162 15342890 ECH