Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1162 ATGTCCATCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCATCTTCTTCAAACCCTAATTCCCAACATGGAATTTCCCTTCCTTCTTCTTCTTCATCCACCAACCTTCCTCTCGGATCCCTCCAGATCCACGATTCTCAATCCATTCCCCACGATTCAGGTCCATCAATTCCTGCTGCAGAAGATTCTAGTGGAACTTCCGAAAAGGTGACAGAATATGGGTCTCCAAATGGTTTGGAGGCTTCATCTCAGCAAAACTCTAGAACCCGTTCTAGGAGTCACTCAGGAAGACGAATGTCTGGATCATCTCAATCAGTGGGGAGGACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCTTGGGTCTGTAAACTCTCATGGAAACTCACCTTCGGCAGGAAGGAAATCTCAGATGGTTAATGGTAATTACTTGCTAAATTTTCAGTATGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTCCTCCTCCACCGCCAAGAAGGCAGCGAAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCCGGAAATTATTCAGCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTGGAGTATCCTCTCTGTCCACAAATAACTTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTGAATGCTGGAAAAGGTGTCCTTTATGTTTTGTGATGGTATCTGTCAAAGATTTATATACTGTACACATAACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGATTTCACATTTTTAACTCGAAAAAAGGATTCGTTTACTCTGTCCCATAAAAATAAACAGGAGACAGATATGACATCTTGTGGCAATGAAGATTTTTGTGATCCCTTTTCTAAGTTTACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTAGATGGCTGGCTGGCCAGGGCTGATTCAGGTCTTGTTGATGACCTAGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAGAGCAGAGAAAGAAGTATTGGAACGAGCACAGGGCTTGTGACAGTGACAGATCTTCTAGGCTTATTGATTATGGACATCTGATACCATCAGCAGCTGTAAGTTTTATGGACACTGATGATGAAACCCGTTCTAATGGATCAAGAACTTCCTCTACAGATTTCCATGACCGAAGTAAGGGCATAATATTGGATAAATCAATTGCTGGGACCTCCCCGGATCAAACTTTGGATGTGGAGAAAGTTTTAGCAGACCAGGAAGTGAATTTATCTTCGTATGAGGAGAAAAATAGTATCCGCAGGCATTCGAATGATAGTGGAGATGTTAAGGAAAGTGACTCGTACAATTTCTACCAGGCTTGTGATGGTCAGCATGTAATTCTTCATACATTGAACATGAAGGCTTTACTTCAGCATTATGGGAGCTATGATAAGCTTCCACATAGAATAAGTGGAAGGATTTTGCAATTGGAGGCAGTTACTCAGTCCGAGGCCATGAGGAGGCGATATCGATTCATAAGCCATTTTCCGTTAACAACAACGTTTCAGCTTTGTGAAATTGATTTGAGTGATATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAGGCGTGCAAATCAGAGGAAGCAGCTTGCAAAGAAGGAACTAAAGGAAAAAATCAAGGCTGAAGCCGCTGCTTCTACTTATTCTGTTACCATACCAACAAGTTATCAGCTTGCTTCTCGTGATAATCCTCCTGTGTTTTCCATGGATGACTTTGGAGCTTTGGGAAATTCTGCTATGTTATCAAGTCCTCCAATTGTTGGGGAGAGAAAATTGTTCTCAAATGTTACAAGGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCCTTCAAATTCAAGACAGTGGAGGATCAAATGATAACAATACGACCATCGGGTCGTCTAGTGCAACAGGTTTGAGAAATGTGGAGGCACCATCATATTCAAATGTTACTTCCAGAGCAGAATCTAATAATATAAGCTTGAATGCACCAAAGACAAAGGACGCGGGGAAGAAGGGAAAGAAACCTAATCGAGTTCTTCTCTCAACAGCTGGTGGCAGGCGCTATTGA 2250 0.4151 MSILPSQTQTAPSSSSSSNPNSQHGISLPSSSSSTNLPLGSLQIHDSQSIPHDSGPSIPAAEDSSGTSEKVTEYGSPNGLEASSQQNSRTRSRSHSGRRMSGSSQSVGRTTGTTSSQRSQQTLGSVNSHGNSPSAGRKSQMVNGNYLLNFQYDPISRSQPRGPPPPPPRRQRKRKPYNKDLFLQANYKFMVLDSGNYSAESMDPDKMLQWEDIICVTYSTPLPIQCPICLEYPLCPQITSCGHIFCFPCILQYLLLGEEDNKGECWKRCPLCFVMVSVKDLYTVHITNVKQYQVGDNIDFTFLTRKKDSFTLSHKNKQETDMTSCGNEDFCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKKYWNEHRACDSDRSSRLIDYGHLIPSAAVSFMDTDDETRSNGSRTSSTDFHDRSKGIILDKSIAGTSPDQTLDVEKVLADQEVNLSSYEEKNSIRRHSNDSGDVKESDSYNFYQACDGQHVILHTLNMKALLQHYGSYDKLPHRISGRILQLEAVTQSEAMRRRYRFISHFPLTTTFQLCEIDLSDILPPEALAPFMDEIKRRANQRKQLAKKELKEKIKAEAAASTYSVTIPTSYQLASRDNPPVFSMDDFGALGNSAMLSSPPIVGERKLFSNVTRLGFAAAHDSPSLQIQDSGGSNDNNTTIGSSSATGLRNVEAPSYSNVTSRAESNNISLNAPKTKDAGKKGKKPNRVLLSTAGGRRY 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1162 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 301 IPR013083 -
Lal25g1162 749 PANTHER RING FINGER 10 FAMILY MEMBER 84 745 IPR039739 -
Lal25g1162 749 SMART ring_2 226 272 IPR001841 -
Lal25g1162 749 MobiDBLite consensus disorder prediction 674 724 - -
Lal25g1162 749 MobiDBLite consensus disorder prediction 153 177 - -
Lal25g1162 749 SUPERFAMILY RING/U-box 225 279 - -
Lal25g1162 749 ProSiteProfiles Zinc finger RING-type profile. 226 272 IPR001841 -
Lal25g1162 749 Coils Coil 587 611 - -
Lal25g1162 749 CDD RING-HC_RNF10 226 273 - -
Lal25g1162 749 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Lal25g1162 749 MobiDBLite consensus disorder prediction 674 749 - -
Lal25g1162 749 Pfam Zinc finger, C3HC4 type (RING finger) 226 272 IPR018957 GO:0046872
Lal25g1162 749 MobiDBLite consensus disorder prediction 1 140 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1162 56 676 C3H Transcription Factor Family AT3G26730 53.106 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1162 - - adu:107494651 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1162 25 15051077 15062087 Lal25g1162 25 15051077 15062087 ECH