Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1130 ATGGCCTCTTCTAGCTACTCCAATTCTCCCTGTGCTGCTTGCAAGTTTCTGAGAAGAAAATGCATGCCAGATTGCAATTTTGCCCAATACTTTCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCATAAAATATTTGGTGCAAGCAATGTGAGCAAGCTTCTGAATGAAGTTCAACCTCATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCTCGAATAAAAGACCCAGTTTATGGTTGTGTTGGAGCCATTTCTGTGCTACAAAGACAAGTGATTAGGCTTCAAAAGGAGCTAGATGCTACAAATGCTGATTTGATCCGTTATATTCCAAATAATAATACTCAAGATGGTAGAAGAATTGTTGGTGAAGGTGGAGAAGGTTCTTCTTCTCTTAATCAAGGGTTTTATTATCCTTTCTCCTTAGAATAA 444 0.3851 MASSSYSNSPCAACKFLRRKCMPDCNFAQYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYIPNNNTQDGRRIVGEGGEGSSSLNQGFYYPFSLE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1130 147 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lal25g1130 147 Coils Coil 89 109 - -
Lal25g1130 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 120 - -
Lal25g1130 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 120 - -
Lal25g1130 147 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1130 Lal-Chr25 14674677 14675120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1130 4 113 AS2 family AT3G27650 84.545 3.37e-68 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal25g1130 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1130 - - gmx:100306630 255.373