Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1091 ATGTCTGGGTTTAGATGCAATGCTTGCAACAAAGAATTGAATGATGAGTTTCAGCAAAAGGAACATTACAAATCAGAGTGGCATCGCTATAACCTCAAGCGCAAGGGCTTTCCCATTATAACAAGCTGTTCAAAAAGATTCCTTGTTCTTCCATCAACTATTCGGCTTTTTCCCGGATACTCGGGTTCAAATATCGATGGATTCGCTGTGGCCGGGGTTCCTGGGGTGACAGAAGCACTATTTCTGGCTAGACAATCTGCAATTGCTCAAGAGAAAGATAAATTGAGTGAAACCCCGATGCTCTATAGCTGTGGCCTGTGTGGTAAGGGTTATAAAAGTTCTAAGGCTCATGCTGAGCATCTTAAATCCCGTGGTCATATGTTGCGAGCATCCGAAGAAAGTAGTTCAGATGAGAAGGCCATAATCAAGCCTATTCAACAACGTGTTTTGAGTAGGCCTCCTCCTCCTCCGCCTAGAAGGGAGGTGGTGGCTAACTCCGAAAATGAAGAAGAAGAAAGTGAAGATGAATGGGAGGAAGTTGATCCTGACGAGGATTTGGTTAATGATGCTTCAAAGTCGTTGACTGATTTGAATATGAACGAGCATGCTGACGATGCTGATATGAATGGAGATAATGATGATAGTTTTGAGGAGTTGGATCCGTCATGTTGCTTTATGTGTGATCAAGAGCACAAGACAATAGAAAGCTGCATGGTTCACATGCACAAGCATCATGGATTCTTCATTCCGGATGTTGAGTATTTGAAGGATCCAAAAGGCCTTCTCACTTATCTTGGCCTTAAGGTAAAAAGGGACTACATTTGTCTTTACTGCAACGATAGATGTTATCCTTTCAGCAGTTTAGAAGCAGTGAGGAAACATATGGCAGCAAAAGGTCACTGTAAGGTGCATTATGGTGATGACGATGATGATGAGGAAGAAGTAGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTACGTGGATGAACAAGGCAAGCAACTGGTTGCATCGGGTGATGCAGCTAACAATGTCGAACTTGGTAGCGCTGGGTCTGAGCTCATAATCACTAGGAGATCCAATGATAGAGTATCAACCAGAACTCTTGGTTCCCGAGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCTCCAGCAAACAATGTAGCCGTCACGGCTGCATTGGCTTCAAGGTTTGCCCTTTTTAACCTTATGCTCTATTTCCTTTGTAATACCGAGGGTGAACATCGGCCATATATCATAGTACCAAATCAATCAATTGACAAGTATTCTATTCTGGTACAGAAGCATGGGATTGGCCACAGTGCAATCAAGGGAGCAGATAGTGAGGATGAAAGTTCTAAAGGAAATGAACAAGTTAGGTGTGGAGATTATGAGGAGCAAGATAGGGATGAAGAGTAA 1425 0.4281 MSGFRCNACNKELNDEFQQKEHYKSEWHRYNLKRKGFPIITSCSKRFLVLPSTIRLFPGYSGSNIDGFAVAGVPGVTEALFLARQSAIAQEKDKLSETPMLYSCGLCGKGYKSSKAHAEHLKSRGHMLRASEESSSDEKAIIKPIQQRVLSRPPPPPPRREVVANSENEEEESEDEWEEVDPDEDLVNDASKSLTDLNMNEHADDADMNGDNDDSFEELDPSCCFMCDQEHKTIESCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYICLYCNDRCYPFSSLEAVRKHMAAKGHCKVHYGDDDDDEEEVELEEFYDYSSSYVDEQGKQLVASGDAANNVELGSAGSELIITRRSNDRVSTRTLGSREFLRYYRQKPRPSPANNVAVTAALASRFALFNLMLYFLCNTEGEHRPYIIVPNQSIDKYSILVQKHGIGHSAIKGADSEDESSKGNEQVRCGDYEEQDRDEE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1091 474 SMART c2h2final6 222 244 IPR013087 -
Lal25g1091 474 SMART c2h2final6 273 300 IPR013087 -
Lal25g1091 474 SMART c2h2final6 102 126 IPR013087 -
Lal25g1091 474 SMART c2h2final6 4 28 IPR013087 -
Lal25g1091 474 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lal25g1091 474 PANTHER ZINC FINGER PROTEIN 622 1 54 IPR040025 -
Lal25g1091 474 PANTHER ZINC FINGER PROTEIN 622 70 403 IPR040025 -
Lal25g1091 474 MobiDBLite consensus disorder prediction 444 467 - -
Lal25g1091 474 MobiDBLite consensus disorder prediction 444 474 - -
Lal25g1091 474 ProSitePatterns Zinc finger C2H2 type domain signature. 104 126 IPR013087 -
Lal25g1091 474 PANTHER ZINC FINGER PROTEIN-RELATED 70 403 - -
Lal25g1091 474 PANTHER ZINC FINGER PROTEIN-RELATED 1 54 - -
Lal25g1091 474 SUPERFAMILY beta-beta-alpha zinc fingers 3 35 IPR036236 -
Lal25g1091 474 MobiDBLite consensus disorder prediction 167 184 - -
Lal25g1091 474 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lal25g1091 474 SUPERFAMILY beta-beta-alpha zinc fingers 211 283 IPR036236 -
Lal25g1091 474 MobiDBLite consensus disorder prediction 144 184 - -
Lal25g1091 474 Pfam C2H2 type zinc-finger (2 copies) 224 326 IPR041661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1091 Lal-Chr25 14226689 14230263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1091 1 405 C2H2 Transcription Factor Family AT2G24500 55.156 4.55e-144 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1527 8 19595912 19599691 Lal25g1091 25 14226689 14230263 LSH