Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1089 ATGTTCTCCGCCTCCCAATTCGATTCCACCACCGCCTTCTCTGGCGGCGGATTCGTTTCTTCTAACTCTACTCAACTAAACGATTCATCACCCGCTCATTCCAGAAGCCGTGAAACTCAGGGTTTGGTTCCGGTGACGGTGAAGCAGATAAGTGAAGCCTCTCATTCCGGTGATGAAAAATCAAGCTTTGTTATCAATGGTGTAGATCTCAATAATGTAACCTTGGTTGGAATGGTGTTTGAGAAAGCTGAGAGAAATACTGATGTTAATTTTGTTTTAGATGATGGAACTGGACGTATTAAATGCCGAAGATGGGTCAATGAGACATTTGACTCAAAGGAAATGGAAGAAATACAAGATGGTATGTATGTTCGTGTTTATGGGCATTTGAAAAGCTTTCAAGGTGTAAGGCAACTTGTTGCCTTTTCTGTCAGGCATAATTTTCTACAAGGTACGTTAAATAACACAAGGCCTGTGACGAATTTTGATGAAATTTCTTTTCACTTCATTGACTGCATCCATAACCACCTCCGCACCAAACTAAAGGTTGAAGGAATCACTCCTGCACATCCTGATTCATCTTTCAACACTCCTGTCAAGAATGCATCAAATGTATCTTCGGCACCATCATCAATTCCAGCATATGCACAATATAGTGTGGATGGACTCAAAGATTGTGATAAACTGGTTATTGACTATCTGCAGCAGCATTCAGACATGTCAGATGAACGTGGAATACATGTCGATGAACTATCTCGAGAACTGAAGCTTCCATTGGACAAGATCATGCTGTCATTGAAAACTCTCGGAGATGATGGTTTAGTATACTCCACCATAGATGATTTCCATTACAAGCAGGCTTGA 864 0.4109 MFSASQFDSTTAFSGGGFVSSNSTQLNDSSPAHSRSRETQGLVPVTVKQISEASHSGDEKSSFVINGVDLNNVTLVGMVFEKAERNTDVNFVLDDGTGRIKCRRWVNETFDSKEMEEIQDGMYVRVYGHLKSFQGVRQLVAFSVRHNFLQGTLNNTRPVTNFDEISFHFIDCIHNHLRTKLKVEGITPAHPDSSFNTPVKNASNVSSAPSSIPAYAQYSVDGLKDCDKLVIDYLQQHSDMSDERGIHVDELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDFHYKQA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1089 287 Gene3D - 217 287 IPR036388 -
Lal25g1089 287 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 287 - -
Lal25g1089 287 SUPERFAMILY Nucleic acid-binding proteins 42 178 IPR012340 -
Lal25g1089 287 Pfam Replication protein A C terminal 193 281 IPR014892 -
Lal25g1089 287 CDD RPA2_DBD_D 72 177 - -
Lal25g1089 287 MobiDBLite consensus disorder prediction 18 41 - -
Lal25g1089 287 PANTHER REPLICATION PROTEIN A-RELATED 1 287 IPR040260 -
Lal25g1089 287 Gene3D - 38 181 IPR012340 -
Lal25g1089 287 PIRSF RPA32 1 287 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal25g1089 287 Pfam OB-fold nucleic acid binding domain 73 144 IPR004365 GO:0003676
Lal25g1089 287 SUPERFAMILY "Winged helix" DNA-binding domain 221 285 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1089 Lal-Chr25 14208355 14212480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1089 1 285 Core DNA Replication Machinery Family AT2G24490 45.890 2.07e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1089 K10739 - gmx:100802512 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1089 25 14208355 14212480 Lal25g1089 25 14208355 14212480 ECH
Lal8g1528 8 19600247 19607836 Lal25g1089 25 14208355 14212480 LSH