Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1077 ATGGAGCGGCCGGGGCTGGGGAGCTTGAATGGCATTCAACATGTTATTGAAATAGCTGGGAGTTCCGGTGCTTCTACTACTGCCTCACATGACAGACATATTAATGGCATTGGTATATCACAGCAAGAAGACATACATAGTGATGCAAGGTTAACTGTTTCTCAGCCGTCGGTTTTAACATCTAGTGTATCTAATGGGTCAAATACTAGGAATTCTTTGTCTGTAAGACGAGGGGAAACCCGCCGGCATAGGAGTCCAGTGCATTCTGCTTTATGGATATCTGTTGAGTTAGTCCTCTTAGTAAGCCAGATTATTGCATCTATCGTTGTTTTGTCTTTATCGAGGCATGAGCATCCACGTACCCCATTGTTTCAATGGATTGTCGGTTATGCAATTGGGTGTGGTGCTACTCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATTCGGGAGCAAGATTCTGCTCAATCACGTCAAACATCTCCTCAGATTAGTGATCCTTCAGGGACACTTCTTTCCAGTTCCAGAACTAACGGAGGAGATGTTCAGGCTGCTATTGTATCATCTAGAAGCAATCAACCTTCAGTGTTGGCGAATCGAAGAATGAAGACGTTAATGGAATACTTTAAAATATCCCTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGATGCTCCTAACCTGTACAGCTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCGATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTTTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAAGATCTGGCACAAAACAGAGGAGCAACTTCTGAGTCCATTAATGCTCTGCCGACTTTCAAGTTCAAGATGAAGAAAAATAAAAGAGGTGGTGAAAGCAACTCGGCTTCAGTTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTGTGATCACCGGAGAAGACGCTGTTTGCTGCATCTGCCTGGCGAAGTATGAAAATAATGATGAGCTAAGAGAATTGCCTTGCTCCCATCTTTTCCACAAAGAGTGCGTAGACAAGTGGTTGAAGATAAATGCCTTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACATAAGAAGATCCATCTCCATGGAAGATGCTAGTCAACTTCAGCATGAGATCAGGGTTGAGAATGGTGTTGCCAGCACTGCAGTTTAA 1254 0.4346 MERPGLGSLNGIQHVIEIAGSSGASTTASHDRHINGIGISQQEDIHSDARLTVSQPSVLTSSVSNGSNTRNSLSVRRGETRRHRSPVHSALWISVELVLLVSQIIASIVVLSLSRHEHPRTPLFQWIVGYAIGCGATLPLLYWRYYHHNHIREQDSAQSRQTSPQISDPSGTLLSSSRTNGGDVQAAIVSSRSNQPSVLANRRMKTLMEYFKISLDCFFAVWFVVGNVWIFGGHSSADDAPNLYSLCIVFLAFSCIGYAMPFILCSTICCFLPCIISILGVREDLAQNRGATSESINALPTFKFKMKKNKRGGESNSASVEGGIVAAGTEKERVITGEDAVCCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGENIRRSISMEDASQLQHEIRVENGVASTAV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1077 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 388 IPR013083 -
Lal25g1077 417 MobiDBLite consensus disorder prediction 58 74 - -
Lal25g1077 417 Pfam Ring finger domain 342 383 IPR001841 -
Lal25g1077 417 CDD RING-H2_RNF111_like 341 383 - -
Lal25g1077 417 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Lal25g1077 417 MobiDBLite consensus disorder prediction 58 80 - -
Lal25g1077 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 406 - -
Lal25g1077 417 MobiDBLite consensus disorder prediction 154 179 - -
Lal25g1077 417 SMART ring_2 342 382 IPR001841 -
Lal25g1077 417 MobiDBLite consensus disorder prediction 156 179 - -
Lal25g1077 417 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 406 - -
Lal25g1077 417 SUPERFAMILY RING/U-box 333 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1077 Lal-Chr25 14095970 14103779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1077 74 389 C3H Transcription Factor Family AT1G80400 56.211 8.94e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1077 - - gmx:100778728 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1549 8 19822941 19827043 Lal25g1077 25 14095970 14103779 LSH
Lal25g1077 25 14095970 14103779 Lal10g0039 10 448424 455864 LSH