Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1069 ATGGATTGTTCTCCAGAACCTCGTTGTATTAAGAAGAAGAAGAAAGATGAAGATGAAGAAACTTCTTCTATCAATACTTCTCAATCTCCTCAACTTCAAGAATCACCATTTCTCAAATTTATAAGCAATTTATCTCCAATACAGCCTGTCAAATCATGTCACATGACACAAGGTTTTGTTGGACTCAGTTCTCCACCTATTGTGTTCATGTCACCACGTATTAGCTGTCACCGTGAAACTAAGTTCTTGGAAAGGACTCAATCACTCAGTGCAGAAATATCTCAAAGTGACAATGGGGGCAAAAATCTTGTTAGTGAGCTTCCTGGTGATTCCATCAATTTACGTTCTCAACTGTCGCTGCCTGGGGTTTTTACAACGGACGCCACTCAGACGGATGTTGACATCAAGAATGACGCAAATACTCAAAACTGCAGTCCTTCACCATCTGTTGATGAATATTTGGCTGATCCTGTGGACATTGATCAAATCTATTCAGCCAACCCAGATGTTAAACAGTCAGATGATGCAATTGAAACATTAAAATGTGATACTGAAGATGGTCCTGGTGGTAGAGCAGAAGAAACTTTGCTTTTGTCACATGAATCCAACAAGTTTCATCAAGAAAAGGCAGCATGTGTTGAAGAACCAGGAAAAGTAGTAGAGGAGAAATTGTCTGCAGATGTTTTAGAGATTCAACCTAGTCATGATTCACATGTCCAGTGTGCAGGAAGTGAACTGCAGGAATATAGTGATCAAACACCCGGGCCAATGCCTGAACCTTTGAAGGATGCCAAAGAATATGAAGATTGTGATGAGATGGTGTCAACCTCACATGTGAGTACAGAGAACATCTCCCAATGTGGTTCTGAGGCTACTCTAAAGCACCACGGCATTCGTAGACGTTGTCTACAATTTGGGGAAGTTGCTATTGGAAGCAACAATTCTCATACGAACTTGAATGCAAGTTCAAGCAAAACGAAAATGGTCAAGCTTTCCGAACCTGTTACTTCTTTGTTTCCTCAACGACATAGCGGAACTGCAAAGCCATCAGGTATTGGGTTGCATTTAAATAGCATCATAAATGCTATCCCACCTGGTTGTGCCGCAACTACTAGTATAAAATCCACATTGTTAATAAGCTTACATAAAATGGACAACATGAAGAGATGCTTAATTTCTTCAAACATGGATGGGCAAGCATCAATTGACACCGGAAATGAGAGCCATGAAATTGTTGTCTCCACAGCCGCTGACTCCTTAAACGCTGAGTCTCCTAGCTTGGCAGAACCTATTCCCGTAAACCCTGCAAGTGTCCATGGTAAGAGGAAACTAAGCCCTACGGATGCTGGAAATTCTGAGGAATTCAACCGATCTAGCCCCATCAAGAAAAAGAAGAAAACTTCAATTGCCAATGATGAGAATAGCTGTAAACGGTGCAACTGTAAGAAGAGTAAATGTTTGAAGCTGTACTGTGATTGTTTTGCTGCTGGTATCTATTGCTCCGACCCATGTTCTTGCCAAGGCTGCTTAAACAGACAAGAATATCAAGAAACTGTTCTTGAAACAAGGCGGCAAATCGAATCGCGCAATCCACTTGCATTTCTTCCCAAAGTTGTACAGCATACAACTGATATTCCATCAACTAATATGGAGGATGCAAATCTGACGACACCATCATCGGCAAGGCATAAAAGGGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAGAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCCAGTGGATGTCGATGTGAGGGATGTAAAAATGCCTATGGCAGGAAAGAAGATTATGTTCCAATTGAACATGCTTTGAGCAAAGAAAGGGTGGTTGAAAAAGGATCGGACAACACATTTTACGATAAACTGGACATGGTGGTAAGCAAGACAGAGTTGTATGACCTACACCGCCTCTCTCCAATAACACCTTCGTTGCAATGCTCTGACCAGGGAAAGGAGGCTGCAAAATCCCGACTTCTTTCTGGAAAATATCTACCATCCCCTGAATCTGCTGATGTGAATATGATTCCATCTCATAAAAAATACACAAAACCTCTGCCAGACTCACATCCGGAAACTGACTCCTACGAATGGCAAATGGACCAATTATCACCGACATGTAATTCAGCTGCCGATGTACTTACTCCTACTCCTGTGTCATCATATCCTCACGAGCCAATTTCTTTCTCTGCTATAACAAAAGAGTCGGTGGATATTCCACAATTGCGACTCTCCCATGCTCCGATTCGCCACTTATCTGGTGGCTCTCTTCGTTGGCGCAGTTCACCAAATACCCCAAGTACCAGAATAGGTGAAACAAAATATGTAGACCAGACTCTTGAATCAGATAGCAGAAGGCTCTTTGACATCCTAGAAGATGAAACTCCTGATATATTGAAAGAAGTTTCAACTCCCACTAACCCTGTGAAAGCAAATTCGCCGAACCAAAAGCGAGTTTCTCCTCCCCATGGTCATAGTCATCTACGCGGACTTGGGTTAAGCTTCTCAAGCGGTGGCTTGAGAAGTGGCAGGAAATTTATACTGAAAGCTGTACCTTCTTTCCCACCATTGACCCCATGCGCCGATTCCAAAGGCAATGATGATGACCATGAGAATTTGGGTAACTGTTCCACCAAGTGA 2667 0.4226 MDCSPEPRCIKKKKKDEDEETSSINTSQSPQLQESPFLKFISNLSPIQPVKSCHMTQGFVGLSSPPIVFMSPRISCHRETKFLERTQSLSAEISQSDNGGKNLVSELPGDSINLRSQLSLPGVFTTDATQTDVDIKNDANTQNCSPSPSVDEYLADPVDIDQIYSANPDVKQSDDAIETLKCDTEDGPGGRAEETLLLSHESNKFHQEKAACVEEPGKVVEEKLSADVLEIQPSHDSHVQCAGSELQEYSDQTPGPMPEPLKDAKEYEDCDEMVSTSHVSTENISQCGSEATLKHHGIRRRCLQFGEVAIGSNNSHTNLNASSSKTKMVKLSEPVTSLFPQRHSGTAKPSGIGLHLNSIINAIPPGCAATTSIKSTLLISLHKMDNMKRCLISSNMDGQASIDTGNESHEIVVSTAADSLNAESPSLAEPIPVNPASVHGKRKLSPTDAGNSEEFNRSSPIKKKKKTSIANDENSCKRCNCKKSKCLKLYCDCFAAGIYCSDPCSCQGCLNRQEYQETVLETRRQIESRNPLAFLPKVVQHTTDIPSTNMEDANLTTPSSARHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNAYGRKEDYVPIEHALSKERVVEKGSDNTFYDKLDMVVSKTELYDLHRLSPITPSLQCSDQGKEAAKSRLLSGKYLPSPESADVNMIPSHKKYTKPLPDSHPETDSYEWQMDQLSPTCNSAADVLTPTPVSSYPHEPISFSAITKESVDIPQLRLSHAPIRHLSGGSLRWRSSPNTPSTRIGETKYVDQTLESDSRRLFDILEDETPDILKEVSTPTNPVKANSPNQKRVSPPHGHSHLRGLGLSFSSGGLRSGRKFILKAVPSFPPLTPCADSKGNDDDHENLGNCSTK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1069 888 MobiDBLite consensus disorder prediction 866 888 - -
Lal25g1069 888 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 477 512 IPR005172 -
Lal25g1069 888 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 565 600 IPR005172 -
Lal25g1069 888 ProSiteProfiles CRC domain profile. 475 602 IPR005172 -
Lal25g1069 888 MobiDBLite consensus disorder prediction 809 829 - -
Lal25g1069 888 MobiDBLite consensus disorder prediction 872 888 - -
Lal25g1069 888 MobiDBLite consensus disorder prediction 424 467 - -
Lal25g1069 888 MobiDBLite consensus disorder prediction 809 841 - -
Lal25g1069 888 MobiDBLite consensus disorder prediction 1 32 - -
Lal25g1069 888 SMART CXC_2 562 603 IPR033467 -
Lal25g1069 888 SMART CXC_2 474 515 IPR033467 -
Lal25g1069 888 MobiDBLite consensus disorder prediction 1 22 - -
Lal25g1069 888 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 20 877 IPR044522 GO:0003700
Lal25g1069 888 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 20 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1069 Lal-Chr25 13958953 13964716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1069 32 96 CPP Transcription Factor Family AT4G14770 38.235 9.56e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lal25g1069 TCR 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1069 K21776 - gmx:547664 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1069 25 13958953 13964716 Lal25g1069 25 13958953 13964716 ECH
Lal8g1562 8 19954918 19956956 Lal25g1069 25 13958953 13964716 LSH