Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1043 ATGGGGAAACCAAATGGGAAAAAGAAGGATACAGAAAGTCCAAAGGCTATTAATAAGGAAAGTCCAAAGGCTATAGGTAAAGTTGGTAATAACAAGGTTTATTCGAAACCAGCTTTGGATGATGACACTGCCATGTTCATCAACATGGCACATGAACTCAGAGAAGAAGGTACCCGATTATTCCACAAAAAAGATCACGAAGGCGCTATGTTAAAGTACTTAAAGGCCCTTAAGCTTCTCCCTAAGAATCACATTGATGTTGCACAATTGCACACCAATATGGCTGGGTGTTATATGCAATTAGGCCTTGGTGAGTACCCTAGAGCAATTAATGAGTGTAATTTGGCGTTGGAGGTGTCGCCGAGGTATAGTAAGGCTCTTTTGAAACGAGCGAAATGCTATGAGTCTTTGAATCGGTTGGATTTGGCGATGAGGGATGTGAGGATTGTTTTGAACACGGAGCCGAATAATGTGGCCGCATTGGAGGTGCTTGATAGCTTGAGGAATACAATGGATGAGAAAGGGATTGTGATCGATGAGACAGAGATTGCGCTGGCGACTATGCAAGAGGCACCTTGTGCGCGTTTGAGGAAAGTTGTTAGAGAGAAGTTGAAGAAGAAAGGGCATAAAAGTGAAGCTGTTGAGGAGAATGTGAATACAAATGCGAACGTGAATGGAAATACAAATGCGGAGGTGAACGGATATGCGAATGCGAATGGTGTCGTTAAGGATAAGGAAGATGTAAAAAAACCAATTGAGAAAAAGAATTTGGTAGTGAAACTTGTGAGGCAAGAAAAAGAAAAAGAAGTCACTAGGACAGTGAAATTGATCTTTGAAGATGATATAAGGTGGGCACAGTTACCTGTGAATTGTAGTATGAGGTTGGTGAGGGATATAATAAGGGATAAGTTTCCTAGATTGAAGGGTGTTCTTGTGAAGTATAGGGATAGAGAAGGTGATTTGGTTACAATTACTACTACGACTGAACTAAGGTTAGCTGAAACTTCAAGTAATGTGTTAGGGTCGATTCGACTATATCTTACTGAAGTCAATCCAGATCAGGAACCATCTTATGATACAACAACAAGCAAGAAGAACGAGGTGCGAAAAGATGATAGAAAACTTGGAGATGCTATTGAGAATGAGTTTGTGGAAGGAGGAAGAGATGTAGTAGCAAATACTACGATCACGGTTGAGGACTGGCTTGTCCAATTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGATTCTGATGCATATCTAGATATTCACGAGGTTGGAATGAAGCTGTATTCATCGGCGATGGAGGATACAGTGACAAGTGATGATGCTCAAGAGCTTTTCGAAATGGCAGAAGATAAATTTCAAGAGATGGCAGCTCTGGCCTTATTTAATTGGGGCAATGTTCACATGTGCAGGGCGAGGAAGTGCGTATCGTTTCCCGAAGATGGATCAAGAGAATCTTCGATTGAACACATGAAAGCAGCATATGAATGGTCTAAAGAGGAGTACATCAATGCAGAAGCTAGATTTGAAGAAGCCTTAAAAATCAAACCCAACTTCTATGAAGGATTTCTTGCTCTCGGGTATCAGCAATTCGAGCAAGCAAAGCTCTGCTGGTGTTACTCGATTGCGAACAAGAATTTAGAAGTCGGTCCTTCAGAAGAGGTTCTACAGCTCTATAACAAGGCAGAGGACAACATTGAAAAGGGGATGTCAATGTGGGAGGAGATCGAGGAGCAGCGTCTGAATGGACTATCTAAATCGGATAAACATAAAGAACAGTTAAAGAAAATGGGTTTGCATAGTCTTTTCAGGGATGTTTCGCCCGACGAAGCCGAAGATCAGGCTTCAAAGATGAGGTTACAAATATATCTTTTATGGGGCACCATTTTGTATGAGCGTTCTGTTGTTGAATATAAGTTAGGACTGCCAAGTTGGGAAGAATGTTTGGAAATTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCCTCAAATGATATTGGTGTTATGATAAAGAATCATTGTTCTAATAAAACATCAATGGAAGGATTCAAAATTGATGAGATAGTCCAAGCTTGGAATGAGATGTATGATGGTTGGCAGTTTAATGTTCCATCTTTTCGACTCGAACCGTTGTTTCGTCGGCGTGTTCCAAAACTTCATTACATCTTGGACCAATTTTGA 2187 0.4088 MGKPNGKKKDTESPKAINKESPKAIGKVGNNKVYSKPALDDDTAMFINMAHELREEGTRLFHKKDHEGAMLKYLKALKLLPKNHIDVAQLHTNMAGCYMQLGLGEYPRAINECNLALEVSPRYSKALLKRAKCYESLNRLDLAMRDVRIVLNTEPNNVAALEVLDSLRNTMDEKGIVIDETEIALATMQEAPCARLRKVVREKLKKKGHKSEAVEENVNTNANVNGNTNAEVNGYANANGVVKDKEDVKKPIEKKNLVVKLVRQEKEKEVTRTVKLIFEDDIRWAQLPVNCSMRLVRDIIRDKFPRLKGVLVKYRDREGDLVTITTTTELRLAETSSNVLGSIRLYLTEVNPDQEPSYDTTTSKKNEVRKDDRKLGDAIENEFVEGGRDVVANTTITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSSAMEDTVTSDDAQELFEMAEDKFQEMAALALFNWGNVHMCRARKCVSFPEDGSRESSIEHMKAAYEWSKEEYINAEARFEEALKIKPNFYEGFLALGYQQFEQAKLCWCYSIANKNLEVGPSEEVLQLYNKAEDNIEKGMSMWEEIEEQRLNGLSKSDKHKEQLKKMGLHSLFRDVSPDEAEDQASKMRLQIYLLWGTILYERSVVEYKLGLPSWEECLEIAVEKFELAGASSNDIGVMIKNHCSNKTSMEGFKIDEIVQAWNEMYDGWQFNVPSFRLEPLFRRRVPKLHYILDQF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1043 728 MobiDBLite consensus disorder prediction 1 30 - -
Lal25g1043 728 PANTHER PROTEIN CLMP1 1 727 IPR044517 -
Lal25g1043 728 SMART tpr_5 88 123 IPR019734 GO:0005515
Lal25g1043 728 SMART tpr_5 50 83 IPR019734 GO:0005515
Lal25g1043 728 SMART tpr_5 124 157 IPR019734 GO:0005515
Lal25g1043 728 SMART tpr_5 488 521 IPR019734 GO:0005515
Lal25g1043 728 SUPERFAMILY CAD & PB1 domains 271 359 - -
Lal25g1043 728 SUPERFAMILY TPR-like 46 166 IPR011990 GO:0005515
Lal25g1043 728 SUPERFAMILY TPR-like 488 580 IPR011990 GO:0005515
Lal25g1043 728 Gene3D - 255 349 - -
Lal25g1043 728 ProSiteProfiles PB1 domain profile. 271 350 IPR000270 GO:0005515
Lal25g1043 728 PANTHER PROTEIN PHOX4 1 727 - -
Lal25g1043 728 CDD PB1 273 348 - -
Lal25g1043 728 Pfam PB1 domain 271 348 IPR000270 GO:0005515
Lal25g1043 728 Gene3D Tetratricopeptide repeat domain 42 212 IPR011990 GO:0005515
Lal25g1043 728 SMART PB1_new 271 350 IPR000270 GO:0005515
Lal25g1043 728 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1043 Lal-Chr25 13805444 13808461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1043 40 157 Calmodulin-binding Proteins AT3G25230 30.709 1.28e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1043 - - vra:106765155 955.281