Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1039 ATGGCATACCATAATCAAAATCATGATCTGTCCCAACAAGAATTCTCACTTCACCATTTCACAAACCAATCTAATTCCACACCCAATTGGCTCAACAACACAACCACCACCACCGCCACCGTTACCACCGCCGTGAATTCATCAGCACAATGGAAGGCAGAGATATTGGGACACCCATTCTATGAGCAGCTTCTGTCAGCACATGTTGGGTGCTTACGGATCGCAACGCCGGTGGATCAGTTGCCGAGAATTGATGCTCAGTTGGCTCAGTCAGAAGATGTGGTGGCTAAATATTCCAACACATTTGGACCCAACATGCTTGGTGCTGATAAAGAACTTGACCAATTCATGTCACACTATGTTTTATTGCTCTGTTCCTTCAAAGAACAACTGCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCTTTACAAACTCTAACAGGAGTCTCAGCCGGAGAAGGTAGAGGCGCAACGATGTCCGATGACGAAGACGATCAAGTAGAAAGCGATGCGAATTTATTCGATGTTAGTTTGGATGGCACAGATAACATGGGATTTGGCCCTCTTGTTCCTACAGAGAATGAAAGGTCCCTTATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAACATGGTTATAAGGAGAAAATTGTGGACATAAGAGAAGAGATTTTGCGAAAGCGCCGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCATGGTGGCAATCTCATTCCAAATGGCCTTATCCTACAGAGGAAGATAAGGCCAGATTGGTGCAGGAAACTGGATTACAGTTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAAAGGAATTGGCACAGTAATGCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGGTAA 939 0.4388 MAYHNQNHDLSQQEFSLHHFTNQSNSTPNWLNNTTTTTATVTTAVNSSAQWKAEILGHPFYEQLLSAHVGCLRIATPVDQLPRIDAQLAQSEDVVAKYSNTFGPNMLGADKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQTLTGVSAGEGRGATMSDDEDDQVESDANLFDVSLDGTDNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASTSTALKSKRKR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1039 312 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Lal25g1039 312 Pfam KNOX1 domain 52 92 IPR005540 GO:0003677|GO:0005634
Lal25g1039 312 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Lal25g1039 312 SMART KNOX1_2 49 93 IPR005540 GO:0003677|GO:0005634
Lal25g1039 312 SMART ELK_2 215 236 IPR005539 GO:0003677
Lal25g1039 312 Pfam KNOX2 domain 107 157 IPR005541 GO:0003677|GO:0005634
Lal25g1039 312 SUPERFAMILY Homeodomain-like 237 300 IPR009057 -
Lal25g1039 312 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 20 312 - -
Lal25g1039 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 312 - -
Lal25g1039 312 SMART KNOX2_2 103 158 IPR005541 GO:0003677|GO:0005634
Lal25g1039 312 SMART HOX_1 237 302 IPR001356 GO:0003677
Lal25g1039 312 Gene3D - 234 309 - -
Lal25g1039 312 CDD homeodomain 238 299 IPR001356 GO:0003677
Lal25g1039 312 Pfam ELK domain 215 236 IPR005539 GO:0003677
Lal25g1039 312 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1039 Lal-Chr25 13773394 13784620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1039 32 312 Homeobox Transcription Factor Family AT5G25220 81.754 5.49e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal25g1039 KNOX2 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1039 - - cam:101494477 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1039 25 13773394 13784620 Lal25g1039 25 13773394 13784620 ECH