Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal25g1037 | ATGTTCATTTCTTACATTTCTCTCACTTATTTCTGTGCTCTTCTTTCTGTCATTCCCCCGAATTCAGAAGATTTCTTATTCCGAAAATCACGCGGAGTATCGTGCTTGTTCAGTGAGCCTCGGTGCAACAGTAATGTTGCTTGCCTTGTGACTTGGAGGTCATGTGTTCAAATCTTGGAAACAACCTCTTTTCCTAATATGAGTAGCTTAGCTGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATCTATAATATAGACGAGTCCGATGATGATGCTGATTTTTTGCCTCAAAAACATGGGACAACTCACGAAAAGTTTGAGAGGATAATCAGAAGTGATGCGAAGGAGGATTCGTGTCAAGCTTGTGGAGAAAGTGGAGATCTTGTGTGTTGTGAAACATGCACTTATGCTTTCCATTCTCGTTGTATACTTCAACCATTTAAAAGACCCCTTTCAGACAACTGGAAGTGCCCTGAATGTGTTAGCCCACTTAACGATATTGATAAGATATTAGAATATGAGACTTGTCCTAATGTAGCTGGCGAAAGTGATGCCACTAAATCGGGGCCAAGCCAGAAGTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATACTTGCACTGCAGATGGGTGCCGGAGGAAGAGTTCCTGAAAGCTTTCAAGAATTATCCTCGCCTAAAGACCAAAATAAATAACTTCCATCGTCAAATGGCATCAGCGAATACTTCTGACGAAGACTTTGTTGCCATTCGACCTGAATGGACTACGGTTGATCGAATACTTGCTTGCAGGACTAAGGAGGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTGCATATGACGAATGCCATTGGGAGCTTGAGTCAGATATCTCTGCATTTCAGCTGGAAATAGATAGATTCAAGAGATTTCAGTCTAAGTCAAGGAAAAAGTCTTCCAATAAGCAAAAAAGCAGCGATACTGATGATGCTGAGTTGAAGCAGCAGAAAGAATTTCAACAGTATGAACATAGCCCTGAGTTTCTTTCAGGGGGTTCATTACACCCGTATCAGCTTGAAGGGTTGAACTTCTTGCGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTCGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCTCTTCTTGAAGAGAACATTTCTCCACATCTAGTGGTTGCTCCACTCTCAACTTTGCGAAACTGGGAACGTGAATTTGCTACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGATCTGCTCAAGCTCGTTCTGTTATAAGACAGTATGAATTTTACTTTCCAAAGAAACAGGAGAAGATCAAGAAAACAAAATATGGACAAACAGTTAACAAAAGCAAGCAAGACAGGGTTAAGTTTGATGTCCTTTTGACATCCTATGAGATGATTAACCTTGATACAGCATCATTGAAATCAATAAAGTGGCAGTGCATGATAGTGGATGAAGGTCATCGTCTTAAAAACAAGGATTCCAAATTATTTTCTTCATTGAAGCAATATTCTACAAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAAACGTACTTATGTAAACTTGTCTGACACATTTCAGAACAATCTAGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAAGATATTAATCAAGAGGAACAGGTCTTGAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGACAGAACTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCATCAAGCAGAAAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGTCGTGGTGGTGCACAAATTTCTCTTATTAATGTTGTTATGGAACTGCGTAAGCTCTGCTGTCATCCCTACATGTTTGAAGGAGCTCAACCAAATCTTGACGATACAGAAGAAGCATTCAAACAGCTACTGGAGTCTTCGGGTAAGTTGCAATTGTTGGACAAGATGATGACGAAGCTTAAAGAGCAAGGACACAGAGTCCTCGTATATACCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTATTGTTCTTACAAGAATTGGTATTATGAAAGAATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATAGATTTAATGCCAAAAATTCTACAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGCATTGGGATAAACCTTGCGACAGCTGATACAGTTATTATATATGACAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAGACTAACAAGGTGATGATTTTTAGGCTAATAACAAGAGGAACAATTGAAGAAAGGATGATGCAGTTGACAAAGAAGAAAATGGTGTTAGAACACCTAGTAGTAGGAAAGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGAACGATATCATAAGCTACGGTTCGAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGCAAATCTCGCCAAATTCATTATGACGATGCTGCCATAGACAGATTGCTGGATCGTGATCAAGTTGGACAAGAAGAGGCTAATTTGGACAATGAAGATGAAAATGGATTTCTGAAGGCCTTTAAGGTGGCGAACTTCGAATACATTGATGAAGTTGAGGCTGCAAAAGAGGAGGCCCGAAAAAGAGAAATGGAGAATAAATCTTCAGCGAGCAGCTCTACAAGAGCAAATTACTGGGAAGAGTTGTTAGGAGACAGATATCAAGAGCATAAAGTGGATGAGCTTAATGCCTTGGGCAAAGGGAAGCGAAGCCGCAACAAATGGCAGGGGGATGATTTTGCTGGCCCTGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCGGATCCGGATCTTAGTGATGATTCTTCAAATTCAACTGGAACTGTTTCTGCTAGAAGGCCTCACAAAAGGAAAGCTCATGCAAATAGCTCAGAGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCACTCAGAGTACTTGGTTTTAATCAAAATCATAGGGCTGCTTTTGCTCAAATTTTGATGAGGTTTGGGGTAGGTGATTATGATTGGAAAGATTTTACTTCTCGCATGAAACAGAAGAGTTTTGAAGAAATCAGAGATTACGGAACCCTTTTCTTGTCTCATATCGCTGATGATATAACTGATTCCCCGACTTTCTCAGATGGTGTTCCAAAAGAAGGACTTCGAATACCTGATTTACTTGTTAGGATTGCAGTTCTGATTTTGATAAGGGACAAAGTGAAGTTTGCTTCAGAAAATCCTGGAACTCCACTCTTTTCAGATGACATCTTAGCACGCTATCCAGGTTTGAAGTGTGTAAAGACATGGAAGGAGAAGCATGATGTAATGTTACTGCAGGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTTATCTGTCAGGAGATGAATATTCCTATAGTAAAGATACCTGTTCCTGGACAAGTTGGTACTCAGGTGCAAAATAATTCAAATATGATAAATTTGGAATCTACCTTCAACCAATCTAGGGAAAATGGTCGGGGTGACATAGCAGCTGATGGTGTAAATATAACAAATATGGAATCTACCTGCAACCAATCTAGGGAAAATGGTGAGAGTGGCATAGCAGCTGATGGTGCACAAGGTTCTGGTGGTGCTAAGAACCAAACACAGTTATTGCAAGAGTCCTCGATTTTATATCAGTATAGAGACATGCAAAGAAAACAGATTGAGTTTGTGAAAAGGAGGGTTCAACTCTTGGAGAAAGGTCTCAATGCCGAGTATCAGAAAGAATACTTTAGTGATCCAAATGCAACTGTGACAAATGAAGACCATAAAAGTGAACCTATGACTAGTGGTTTACCAAGTTATACATCAAGGGATACTGTCACCAAAATGATTGATCAACTTCCTCAAGTAGAAGCAATAGCTTCTCAAGAAATTTCTTTTGCTGCTAGCGATTATGCTCCAAACCGGTTGGAATTAGTTCGTAATTACAATGAGATGTGCAAGGTAGTAAATGGAGGCTCCATGGATATAGCTCAAACATATTTGGCTAGTGACCCAACAGAAGTCAATGTTATGAAGAACTTGCATCAACTAGAAACTATTTGTGAAGATGTCAAAAGAATACTAACACCTACTGCAGAGAATCCTGGTAATGGTGTCTGA | 4335 | 0.3977 | MFISYISLTYFCALLSVIPPNSEDFLFRKSRGVSCLFSEPRCNSNVACLVTWRSCVQILETTSFPNMSSLAERLRVRSDRRPIYNIDESDDDADFLPQKHGTTHEKFERIIRSDAKEDSCQACGESGDLVCCETCTYAFHSRCILQPFKRPLSDNWKCPECVSPLNDIDKILEYETCPNVAGESDATKSGPSQKFVKQYLVKWKGLSYLHCRWVPEEEFLKAFKNYPRLKTKINNFHRQMASANTSDEDFVAIRPEWTTVDRILACRTKEEKEYLVKWKELAYDECHWELESDISAFQLEIDRFKRFQSKSRKKSSNKQKSSDTDDAELKQQKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARSVIRQYEFYFPKKQEKIKKTKYGQTVNKSKQDRVKFDVLLTSYEMINLDTASLKSIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQKRTYVNLSDTFQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQVLRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSIKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMFEGAQPNLDDTEEAFKQLLESSGKLQLLDKMMTKLKEQGHRVLVYTQFQHMLDLLEDYCSYKNWYYERIDGKVGGAERQIRIDRFNAKNSTRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQLTKKKMVLEHLVVGKLKAQNINQEELNDIISYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVGQEEANLDNEDENGFLKAFKVANFEYIDEVEAAKEEARKREMENKSSASSSTRANYWEELLGDRYQEHKVDELNALGKGKRSRNKWQGDDFAGPEDVSSDGEDDNYEADPDLSDDSSNSTGTVSARRPHKRKAHANSSEPLPLMEGEGRSLRVLGFNQNHRAAFAQILMRFGVGDYDWKDFTSRMKQKSFEEIRDYGTLFLSHIADDITDSPTFSDGVPKEGLRIPDLLVRIAVLILIRDKVKFASENPGTPLFSDDILARYPGLKCVKTWKEKHDVMLLQAVLKHGYGRWQAIVDDKDLKIQEVICQEMNIPIVKIPVPGQVGTQVQNNSNMINLESTFNQSRENGRGDIAADGVNITNMESTCNQSRENGESGIAADGAQGSGGAKNQTQLLQESSILYQYRDMQRKQIEFVKRRVQLLEKGLNAEYQKEYFSDPNATVTNEDHKSEPMTSGLPSYTSRDTVTKMIDQLPQVEAIASQEISFAASDYAPNRLELVRNYNEMCKVVNGGSMDIAQTYLASDPTEVNVMKNLHQLETICEDVKRILTPTAENPGNGV | 1444 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal25g1037 | 1444 | Pfam | Helicase conserved C-terminal domain | 685 | 798 | IPR001650 | - | |
Lal25g1037 | 1444 | ProSiteProfiles | Zinc finger PHD-type profile. | 117 | 164 | IPR019787 | - | |
Lal25g1037 | 1444 | CDD | CD2_tandem | 256 | 306 | - | - | |
Lal25g1037 | 1444 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 71 | 1142 | - | - | |
Lal25g1037 | 1444 | SMART | chromo_7 | 165 | 231 | IPR000953 | - | |
Lal25g1037 | 1444 | SMART | chromo_7 | 256 | 309 | IPR000953 | - | |
Lal25g1037 | 1444 | ProSitePatterns | Zinc finger PHD-type signature. | 120 | 161 | IPR019786 | - | |
Lal25g1037 | 1444 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 334 | 595 | IPR027417 | - | |
Lal25g1037 | 1444 | PANTHER | CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE | 71 | 1142 | - | - | |
Lal25g1037 | 1444 | SMART | DUF1087_2 | 918 | 980 | IPR009463 | - | |
Lal25g1037 | 1444 | SUPERFAMILY | Chromo domain-like | 245 | 307 | IPR016197 | - | |
Lal25g1037 | 1444 | SMART | DUF1086_2 | 993 | 1146 | IPR009462 | GO:0003677|GO:0006338 | |
Lal25g1037 | 1444 | Gene3D | - | 1113 | 1318 | - | - | |
Lal25g1037 | 1444 | MobiDBLite | consensus disorder prediction | 1325 | 1344 | - | - | |
Lal25g1037 | 1444 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 688 | 849 | IPR001650 | - | |
Lal25g1037 | 1444 | Pfam | SNF2-related domain | 370 | 662 | IPR000330 | GO:0005524|GO:0140658 | |
Lal25g1037 | 1444 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - | |
Lal25g1037 | 1444 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 166 | 248 | IPR000953 | - | |
Lal25g1037 | 1444 | Gene3D | - | 342 | 604 | IPR038718 | - | |
Lal25g1037 | 1444 | Gene3D | - | 246 | 306 | - | - | |
Lal25g1037 | 1444 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 362 | 548 | IPR014001 | - | |
Lal25g1037 | 1444 | Pfam | CHD subfamily II, DUF1087 | 919 | 971 | IPR009463 | - | |
Lal25g1037 | 1444 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 258 | 319 | IPR000953 | - | |
Lal25g1037 | 1444 | MobiDBLite | consensus disorder prediction | 1254 | 1275 | - | - | |
Lal25g1037 | 1444 | Pfam | CHD subfamily II, SANT-like domain | 1011 | 1143 | IPR009462 | GO:0003677|GO:0006338 | |
Lal25g1037 | 1444 | Gene3D | - | 605 | 829 | IPR027417 | - | |
Lal25g1037 | 1444 | MobiDBLite | consensus disorder prediction | 982 | 998 | - | - | |
Lal25g1037 | 1444 | Coils | Coil | 565 | 585 | - | - | |
Lal25g1037 | 1444 | MobiDBLite | consensus disorder prediction | 966 | 1031 | - | - | |
Lal25g1037 | 1444 | SMART | ultradead3 | 346 | 571 | IPR014001 | - | |
Lal25g1037 | 1444 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 597 | 853 | IPR027417 | - | |
Lal25g1037 | 1444 | SMART | PHD_3 | 119 | 162 | IPR001965 | - | |
Lal25g1037 | 1444 | CDD | SF2_C_SNF | 683 | 809 | - | - | |
Lal25g1037 | 1444 | Gene3D | - | 166 | 241 | - | - | |
Lal25g1037 | 1444 | CDD | CD1_tandem | 164 | 238 | - | - | |
Lal25g1037 | 1444 | SMART | helicmild6 | 714 | 798 | IPR001650 | - | |
Lal25g1037 | 1444 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 189 | 225 | IPR023780 | - | |
Lal25g1037 | 1444 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 259 | 306 | IPR023780 | - | |
Lal25g1037 | 1444 | SUPERFAMILY | Chromo domain-like | 132 | 243 | IPR016197 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal25g1037 | Lal-Chr25 | 13728580 | 13746746 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal25g1037 | 372 | 825 | RAD5 or RAD16-like Gene Family | AT1G02670 | 23.429 | 4.15e-28 | 120 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Lal25g1037 | SNF2_N | 3.2e-61 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal25g1037 | K11643 | - | gmx:100804203 | 2088.54 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal25g1037 | 25 | 13728580 | 13746746 | Lal10g0031 | 10 | 324426 | 351865 | LSH | |
Lal25g1037 | 25 | 13728580 | 13746746 | Lal17g0208 | 17 | 1264026 | 1286029 | PCT | |
Lal25g1037 | 25 | 13728580 | 13746746 | Lal21g0312 | 21 | 2070464 | 2089699 | PCT | |
Lal17g0208 | 17 | 1264026 | 1286029 | Lal25g1037 | 25 | 13728580 | 13746746 | PCT | |
Lal21g0312 | 21 | 2070464 | 2089699 | Lal25g1037 | 25 | 13728580 | 13746746 | PCT |