Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1037 ATGTTCATTTCTTACATTTCTCTCACTTATTTCTGTGCTCTTCTTTCTGTCATTCCCCCGAATTCAGAAGATTTCTTATTCCGAAAATCACGCGGAGTATCGTGCTTGTTCAGTGAGCCTCGGTGCAACAGTAATGTTGCTTGCCTTGTGACTTGGAGGTCATGTGTTCAAATCTTGGAAACAACCTCTTTTCCTAATATGAGTAGCTTAGCTGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATCTATAATATAGACGAGTCCGATGATGATGCTGATTTTTTGCCTCAAAAACATGGGACAACTCACGAAAAGTTTGAGAGGATAATCAGAAGTGATGCGAAGGAGGATTCGTGTCAAGCTTGTGGAGAAAGTGGAGATCTTGTGTGTTGTGAAACATGCACTTATGCTTTCCATTCTCGTTGTATACTTCAACCATTTAAAAGACCCCTTTCAGACAACTGGAAGTGCCCTGAATGTGTTAGCCCACTTAACGATATTGATAAGATATTAGAATATGAGACTTGTCCTAATGTAGCTGGCGAAAGTGATGCCACTAAATCGGGGCCAAGCCAGAAGTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATACTTGCACTGCAGATGGGTGCCGGAGGAAGAGTTCCTGAAAGCTTTCAAGAATTATCCTCGCCTAAAGACCAAAATAAATAACTTCCATCGTCAAATGGCATCAGCGAATACTTCTGACGAAGACTTTGTTGCCATTCGACCTGAATGGACTACGGTTGATCGAATACTTGCTTGCAGGACTAAGGAGGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTGCATATGACGAATGCCATTGGGAGCTTGAGTCAGATATCTCTGCATTTCAGCTGGAAATAGATAGATTCAAGAGATTTCAGTCTAAGTCAAGGAAAAAGTCTTCCAATAAGCAAAAAAGCAGCGATACTGATGATGCTGAGTTGAAGCAGCAGAAAGAATTTCAACAGTATGAACATAGCCCTGAGTTTCTTTCAGGGGGTTCATTACACCCGTATCAGCTTGAAGGGTTGAACTTCTTGCGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTCGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCTCTTCTTGAAGAGAACATTTCTCCACATCTAGTGGTTGCTCCACTCTCAACTTTGCGAAACTGGGAACGTGAATTTGCTACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGATCTGCTCAAGCTCGTTCTGTTATAAGACAGTATGAATTTTACTTTCCAAAGAAACAGGAGAAGATCAAGAAAACAAAATATGGACAAACAGTTAACAAAAGCAAGCAAGACAGGGTTAAGTTTGATGTCCTTTTGACATCCTATGAGATGATTAACCTTGATACAGCATCATTGAAATCAATAAAGTGGCAGTGCATGATAGTGGATGAAGGTCATCGTCTTAAAAACAAGGATTCCAAATTATTTTCTTCATTGAAGCAATATTCTACAAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAAACGTACTTATGTAAACTTGTCTGACACATTTCAGAACAATCTAGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAAGATATTAATCAAGAGGAACAGGTCTTGAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGACAGAACTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCATCAAGCAGAAAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGTCGTGGTGGTGCACAAATTTCTCTTATTAATGTTGTTATGGAACTGCGTAAGCTCTGCTGTCATCCCTACATGTTTGAAGGAGCTCAACCAAATCTTGACGATACAGAAGAAGCATTCAAACAGCTACTGGAGTCTTCGGGTAAGTTGCAATTGTTGGACAAGATGATGACGAAGCTTAAAGAGCAAGGACACAGAGTCCTCGTATATACCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTATTGTTCTTACAAGAATTGGTATTATGAAAGAATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATAGATTTAATGCCAAAAATTCTACAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGCATTGGGATAAACCTTGCGACAGCTGATACAGTTATTATATATGACAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAGACTAACAAGGTGATGATTTTTAGGCTAATAACAAGAGGAACAATTGAAGAAAGGATGATGCAGTTGACAAAGAAGAAAATGGTGTTAGAACACCTAGTAGTAGGAAAGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGAACGATATCATAAGCTACGGTTCGAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGCAAATCTCGCCAAATTCATTATGACGATGCTGCCATAGACAGATTGCTGGATCGTGATCAAGTTGGACAAGAAGAGGCTAATTTGGACAATGAAGATGAAAATGGATTTCTGAAGGCCTTTAAGGTGGCGAACTTCGAATACATTGATGAAGTTGAGGCTGCAAAAGAGGAGGCCCGAAAAAGAGAAATGGAGAATAAATCTTCAGCGAGCAGCTCTACAAGAGCAAATTACTGGGAAGAGTTGTTAGGAGACAGATATCAAGAGCATAAAGTGGATGAGCTTAATGCCTTGGGCAAAGGGAAGCGAAGCCGCAACAAATGGCAGGGGGATGATTTTGCTGGCCCTGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCGGATCCGGATCTTAGTGATGATTCTTCAAATTCAACTGGAACTGTTTCTGCTAGAAGGCCTCACAAAAGGAAAGCTCATGCAAATAGCTCAGAGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCACTCAGAGTACTTGGTTTTAATCAAAATCATAGGGCTGCTTTTGCTCAAATTTTGATGAGGTTTGGGGTAGGTGATTATGATTGGAAAGATTTTACTTCTCGCATGAAACAGAAGAGTTTTGAAGAAATCAGAGATTACGGAACCCTTTTCTTGTCTCATATCGCTGATGATATAACTGATTCCCCGACTTTCTCAGATGGTGTTCCAAAAGAAGGACTTCGAATACCTGATTTACTTGTTAGGATTGCAGTTCTGATTTTGATAAGGGACAAAGTGAAGTTTGCTTCAGAAAATCCTGGAACTCCACTCTTTTCAGATGACATCTTAGCACGCTATCCAGGTTTGAAGTGTGTAAAGACATGGAAGGAGAAGCATGATGTAATGTTACTGCAGGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTTATCTGTCAGGAGATGAATATTCCTATAGTAAAGATACCTGTTCCTGGACAAGTTGGTACTCAGGTGCAAAATAATTCAAATATGATAAATTTGGAATCTACCTTCAACCAATCTAGGGAAAATGGTCGGGGTGACATAGCAGCTGATGGTGTAAATATAACAAATATGGAATCTACCTGCAACCAATCTAGGGAAAATGGTGAGAGTGGCATAGCAGCTGATGGTGCACAAGGTTCTGGTGGTGCTAAGAACCAAACACAGTTATTGCAAGAGTCCTCGATTTTATATCAGTATAGAGACATGCAAAGAAAACAGATTGAGTTTGTGAAAAGGAGGGTTCAACTCTTGGAGAAAGGTCTCAATGCCGAGTATCAGAAAGAATACTTTAGTGATCCAAATGCAACTGTGACAAATGAAGACCATAAAAGTGAACCTATGACTAGTGGTTTACCAAGTTATACATCAAGGGATACTGTCACCAAAATGATTGATCAACTTCCTCAAGTAGAAGCAATAGCTTCTCAAGAAATTTCTTTTGCTGCTAGCGATTATGCTCCAAACCGGTTGGAATTAGTTCGTAATTACAATGAGATGTGCAAGGTAGTAAATGGAGGCTCCATGGATATAGCTCAAACATATTTGGCTAGTGACCCAACAGAAGTCAATGTTATGAAGAACTTGCATCAACTAGAAACTATTTGTGAAGATGTCAAAAGAATACTAACACCTACTGCAGAGAATCCTGGTAATGGTGTCTGA 4335 0.3977 MFISYISLTYFCALLSVIPPNSEDFLFRKSRGVSCLFSEPRCNSNVACLVTWRSCVQILETTSFPNMSSLAERLRVRSDRRPIYNIDESDDDADFLPQKHGTTHEKFERIIRSDAKEDSCQACGESGDLVCCETCTYAFHSRCILQPFKRPLSDNWKCPECVSPLNDIDKILEYETCPNVAGESDATKSGPSQKFVKQYLVKWKGLSYLHCRWVPEEEFLKAFKNYPRLKTKINNFHRQMASANTSDEDFVAIRPEWTTVDRILACRTKEEKEYLVKWKELAYDECHWELESDISAFQLEIDRFKRFQSKSRKKSSNKQKSSDTDDAELKQQKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARSVIRQYEFYFPKKQEKIKKTKYGQTVNKSKQDRVKFDVLLTSYEMINLDTASLKSIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQKRTYVNLSDTFQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQVLRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSIKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMFEGAQPNLDDTEEAFKQLLESSGKLQLLDKMMTKLKEQGHRVLVYTQFQHMLDLLEDYCSYKNWYYERIDGKVGGAERQIRIDRFNAKNSTRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQLTKKKMVLEHLVVGKLKAQNINQEELNDIISYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVGQEEANLDNEDENGFLKAFKVANFEYIDEVEAAKEEARKREMENKSSASSSTRANYWEELLGDRYQEHKVDELNALGKGKRSRNKWQGDDFAGPEDVSSDGEDDNYEADPDLSDDSSNSTGTVSARRPHKRKAHANSSEPLPLMEGEGRSLRVLGFNQNHRAAFAQILMRFGVGDYDWKDFTSRMKQKSFEEIRDYGTLFLSHIADDITDSPTFSDGVPKEGLRIPDLLVRIAVLILIRDKVKFASENPGTPLFSDDILARYPGLKCVKTWKEKHDVMLLQAVLKHGYGRWQAIVDDKDLKIQEVICQEMNIPIVKIPVPGQVGTQVQNNSNMINLESTFNQSRENGRGDIAADGVNITNMESTCNQSRENGESGIAADGAQGSGGAKNQTQLLQESSILYQYRDMQRKQIEFVKRRVQLLEKGLNAEYQKEYFSDPNATVTNEDHKSEPMTSGLPSYTSRDTVTKMIDQLPQVEAIASQEISFAASDYAPNRLELVRNYNEMCKVVNGGSMDIAQTYLASDPTEVNVMKNLHQLETICEDVKRILTPTAENPGNGV 1444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1037 1444 Pfam Helicase conserved C-terminal domain 685 798 IPR001650 -
Lal25g1037 1444 ProSiteProfiles Zinc finger PHD-type profile. 117 164 IPR019787 -
Lal25g1037 1444 CDD CD2_tandem 256 306 - -
Lal25g1037 1444 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 71 1142 - -
Lal25g1037 1444 SMART chromo_7 165 231 IPR000953 -
Lal25g1037 1444 SMART chromo_7 256 309 IPR000953 -
Lal25g1037 1444 ProSitePatterns Zinc finger PHD-type signature. 120 161 IPR019786 -
Lal25g1037 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 595 IPR027417 -
Lal25g1037 1444 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 71 1142 - -
Lal25g1037 1444 SMART DUF1087_2 918 980 IPR009463 -
Lal25g1037 1444 SUPERFAMILY Chromo domain-like 245 307 IPR016197 -
Lal25g1037 1444 SMART DUF1086_2 993 1146 IPR009462 GO:0003677|GO:0006338
Lal25g1037 1444 Gene3D - 1113 1318 - -
Lal25g1037 1444 MobiDBLite consensus disorder prediction 1325 1344 - -
Lal25g1037 1444 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 849 IPR001650 -
Lal25g1037 1444 Pfam SNF2-related domain 370 662 IPR000330 GO:0005524|GO:0140658
Lal25g1037 1444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Lal25g1037 1444 ProSiteProfiles Chromo and chromo shadow domain profile. 166 248 IPR000953 -
Lal25g1037 1444 Gene3D - 342 604 IPR038718 -
Lal25g1037 1444 Gene3D - 246 306 - -
Lal25g1037 1444 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 548 IPR014001 -
Lal25g1037 1444 Pfam CHD subfamily II, DUF1087 919 971 IPR009463 -
Lal25g1037 1444 ProSiteProfiles Chromo and chromo shadow domain profile. 258 319 IPR000953 -
Lal25g1037 1444 MobiDBLite consensus disorder prediction 1254 1275 - -
Lal25g1037 1444 Pfam CHD subfamily II, SANT-like domain 1011 1143 IPR009462 GO:0003677|GO:0006338
Lal25g1037 1444 Gene3D - 605 829 IPR027417 -
Lal25g1037 1444 MobiDBLite consensus disorder prediction 982 998 - -
Lal25g1037 1444 Coils Coil 565 585 - -
Lal25g1037 1444 MobiDBLite consensus disorder prediction 966 1031 - -
Lal25g1037 1444 SMART ultradead3 346 571 IPR014001 -
Lal25g1037 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 853 IPR027417 -
Lal25g1037 1444 SMART PHD_3 119 162 IPR001965 -
Lal25g1037 1444 CDD SF2_C_SNF 683 809 - -
Lal25g1037 1444 Gene3D - 166 241 - -
Lal25g1037 1444 CDD CD1_tandem 164 238 - -
Lal25g1037 1444 SMART helicmild6 714 798 IPR001650 -
Lal25g1037 1444 Pfam Chromo (CHRromatin Organisation MOdifier) domain 189 225 IPR023780 -
Lal25g1037 1444 Pfam Chromo (CHRromatin Organisation MOdifier) domain 259 306 IPR023780 -
Lal25g1037 1444 SUPERFAMILY Chromo domain-like 132 243 IPR016197 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal25g1037 Lal-Chr25 13728580 13746746 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1037 372 825 RAD5 or RAD16-like Gene Family AT1G02670 23.429 4.15e-28 120
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal25g1037 SNF2_N 3.2e-61 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1037 K11643 - gmx:100804203 2088.54
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1037 25 13728580 13746746 Lal10g0031 10 324426 351865 LSH
Lal25g1037 25 13728580 13746746 Lal17g0208 17 1264026 1286029 PCT
Lal25g1037 25 13728580 13746746 Lal21g0312 21 2070464 2089699 PCT
Lal17g0208 17 1264026 1286029 Lal25g1037 25 13728580 13746746 PCT
Lal21g0312 21 2070464 2089699 Lal25g1037 25 13728580 13746746 PCT