Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1030 ATGGCATTGTTCAGGAAATTCTTCTATAAGAAGCCCCCTGATGGGCTTTTAGAAATCAGTGAAAGGGTTTATGTCTTTGATTATTGCTTTACCTCGGATGTAATGGAAGAAGATGAACATAAAGTTTATATCGAGGGAATAATTGCACAACTTCACGGTCACTTCCCTGATGCTTCATATATGGTGTTCAACATGCGTGAGGGAGAAAGCCCGAGCCCCATCTCTAACATTTTGTCCGACTATGATATGATGGTGATTGACTATCCTCGCCAGTATGAGGGTTGCCCGTTACTCACCATGGAGACGATCCACCATTTCTTGAAATCGGGTGAAAACTGGGTTCAACTCGGGCGGCAAAATCTTATCTTGATGCATTGTGAACGAGGCGGGTGGGCGGTTCTAGCGTTTATGCTGGCTGCATTCTTGATTTATAGAAAGCAGTTTACAGGGGAGCAGAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAGCTTTTGCAATTTATGTCACCATTGAATCCATTACCTTCACAATTGAGGTATCTTCAGTATATATCAAGAAGAAATGTCGGTTCGGAATGGCCCCCTCTAGACAGGGCACTTACATTGGATTGTGTAATTCTAAGACTAGTTCCGAAAATGGATGGAGAAGGTGGTTGTCGTCCTATATTTCGGATATACGGACAAGACCCTTTTATGGCTGCTGATCGGACTCCCAAAGTTCTGTTTTCAACTCCAAAGAGGAGCAAACTTGTTCGGTATTACAAGCAGGCTGATTGTGAATTGGTTAAGATTGACATCAATTGCCATGTTCAAGGCGATGTTGTTCTCGAGTGTATTAGTCTGGACAGTGATTTGGATCGTGAAAACATGATGTTTCGAGTTATGTTTAATACATCATTCATAAGATCAAATATCTTGATGCTTAACCGTGACGAAATTGACATATTATGGAATACTAAAGACAACTTCCCTAAAAATTTCAGAGTAGAGGCTCTTTTCTCTGATATGGAAGCTTCTTCTTCTGTTATTCCAATGGATATGCCTTGTATCGGGGAGAAAGAAGGCCTACCGGTTGAAGCATTTGCTAAGGTCAAAGAAATGTTCAACAATGTTGACTGGCTAGATTCAAATACAGAAGTAGCAAATGTGCTCCAACAGATCACAGCATCAAATATGCTTCTTGAAAGATTGGACTGTGGCATTTCTTCCCCGACAAGAAAATTGCTTAAGGAGACATTATCCGGAGGATTTAAACTCGATTTGAAGACACAAAGCAATATGAAAATTTCACCTTCCGCAGCTCACTCGAGATCTATAACCTCATTTGAATCATCTTCATATGCTCTTATGGAAAAGATAGATCAATTTGAATCAAAAGCATTGCCTGAAAATTACATCAAACCTCTTGCACTCAAGGATATCGGACCATCAAGGCCAAAGGAATCGTTGGAAAATGATACGAACTTTCCTACATCTACGGAACAATCTATTCCCTTAATTGAACCATTATTGGATACAAGTTCAATGGAAAAAAATACTAAACCATCAAAATCCGAGGGAATGGACATTGATTCACTAGAACAAACGGAATCATTGGATGATGACACCAACTTTCCTACATCTGTGGCTCAGGGTAAACAATCTATTCCCTCAATCGAACCATCCACTGATGCAAATTCAAGGAAAGAGAATATTGGACTTCTTGAATCAAAGGTAAAAGAGATTGAGTCACTAGACATGAAGGCAATGCCGGAAAATGATGGACGATTTATATTTGAACCGCAGACACAGCTAGAAATTGAGGATGGTCTTATGGTAAAGGAGATTGAACCATTAGAATCAAAGGCATTGCCAGAAAGTAACACGGACACTCTTGCACCTATGGATCAGGAGAAACAACCTATTCCATTAACTGAAATATCAACAGATTCAAATTCTACTGAAATACAGATTGAATCATTAGAGTCAAAGAAAATATTGGAAGATGTTACCATGTTTCCTGTATCTGTGGCTCAAGGGAAAAAACTTACTCCGCTAAATGAACCATCACTTGGCGAGAAGGATGGACTGTTAGAGCTCAAGAAAAAGGAGATTGAATCATTAGGCTCGATTGCATTGTTGGAAAATGATAGAAGATCCAAGTTTGAACCAAAAGTGCTGCCAGAAATTGAGATGAAGGGTCCGACTTCTGAAGTTCAGGAAAAACTTTCTATGTCCATATTTGAATCATCTGAGGTTACTCCTGTGAAAAAGAAGATAGAAACATTAGAATCAAAGGCATCGCCAGAAAATAGCAAGTCTCTTGCCCTTGTGGATCAGGAGAAACAAACTATTCCATCTTCTGGACTCTCAACACATTCAATTTCTACTGATAAGATCGAACCTTTCGAATCAAACATGTTGTTAGAAAATGTTACAAACTTTCCTGTATCTGTGGCTCAAGGGAAAAAGTCCACTACTCCCTTTGTTGAACTATCAATCGATGCAAATTCAGCGAAAAAGAAGTATGGACCAGAGTCGAAGGAAAAGGACACTGAACCACTAGAATCGAAGGCATTGCTAGAAAATGATGACATGTATTCTACATCAAAGGATGTAAATTCAGTGAAAAAGAAGATTGGATCATTAGAGTCGAAGGAAAAGGATACTGAATCATTAGAATCGAAGGCATTGTTAGAAAATAATGACATTTATTCTACATCAAAGGATACTGGATCGTTAGAGTCAAAGGCATTGTTGGAAAATGATGACAATCATTCGACATCTATCTCTCACAGGAAACAATCTATTCCCTTAGCTGAACCATCAATGGATGTGAATTCGATGAAAAAGGAGAGTGTAGAATTAGAATCAGAAATGTTGTCAGAAAATGATATCAAGAGTCTCACATCCACAATTCAGAGGAAACAAGATAGTCCCTCACTTGGACTAACAACTATGTTGCACGATCACGCACCGATGGGTAATATCATACAAGTCACTGAAGAAGTGACAGTATCTACCCCTTCTTCTACAAGTGTTCCTCTAGCGTCATCATCATCACCAACATTGCTGCCATCTAAAGTGGATGCTCTTTCCGCAATGCAGAAGACGTGTCAATCTTTTGTTCCTCCTCCACCACCTCCTCCTCATCCTCAAAATGAGCCTAATTCAAAATTGATGCAGCCTATTCTTACAAAGTACTGTGAAAATGCAATGCATGATAAAGGTAGAAAATCATTAGTTACTCCTCCTCCACCCCCACCTCTTCCTGCAACATCCCTTTCTACAGTCGTAGATTCATTTAAAGGTCCTCCTCCACCTCCGCTTCCACCTCCATTAAGTACAAACAAATCAGCTGCTTCAACTGGAAAGATCTCATCATGTTCAATACCTCCACCACCACCTCCAGCTCCTCGACATTGTTCCACCACACCTGCTCCTACTCTTACAGCATCGGCCCCGCCACCTCCACCTCCTCCATTGTCTAAGAACCCTGATGTTCCATCTAAGCCTGTACCCCCTCCCCCTTCCCCTCCTACTACAAAATCTGACACTGCATTGCTGCAGCCTCATGCACCTCCAGTTCCTGGACCACCTGGTGTTCCGTTTGGTGCAAAGGGTCGTGGCCTATTTCGAGCTAATCCTAAAGGCCCGTCTCAGACTAAACGGAGCAATCTGAAACCTTACCATTGGTTAAAACTAACAAGAGCCGTGCATGGAAGTTTATGGGCTGAGACACAGAAACTTGAAGAAGCTTGTAGGGCTCCGGAGTTTGACATGTCAGAACTTGAGAGTCTTTTCTCTGCAGCTGCTCCAGATCATGGAAAAGAGGGGAATTCAAATCGCCGTACCTCGCGCCAAAAAGTTGACAAAGTGCAACTGATTGAGCTGAGGCGAGCATATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTACCTGATTTAATGAGTGCAGTGCTTGCAATGGATGATTCAGTATTATATGTTGACCAGGTTGAGAACCTTATAAAGTTCTGTCCAACCAAAGAAGAGATGGAGCAGCTCAAGGCCTATACCGGAGATAAGGACAACTTGGGAAAGTGTGAACAATTCTTCTTAGAAATGATGAAAGTGCCAAGAGTGGAAAACAAGCTAAGAGTTTTTTCTTTTAAGATGCAATTCTGCTCACAGGTGAAAGATCTTAGAAGGGACTTGAATATTGTAAACTCTGCATCAGAAGAGATCAGGAATTCAGTCAAGTTGAAAAGAATCATGCAAACCATTCTTTCTTTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCTGCTATTGGGTTCCGGTTGGATAGTCTCCTTAAACTCACTGATACACGAGCGAGGAACAACAAGATGACTCTCATGCATTACCTTTGTAAGGTGCTAGCTGAAAAGCTTCCAGAACTTTTAAATTTCCCCAAAGACTTGGTGCATTTAGAGGGTTCAACCAAGATACAATTAAAATATTTGGCAGAAGAAATGCAAGCTATTAGTAAAGGACTAGAGAAAGTTGTTCAGGAATTGACTGCATCAGAGAATGATGGGCCTGTGTCAGAATGGTTTTGCCAGATTTTAAAGGAATTTCTTAGTGATGCTGAAGCTGAAGTGAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCATTAGCCCTTTACTTTGGAGAAGATCCGGCGCGTGTCCCGTTTGAACAAGTGGTATCTACTCTGCTAAACTTTGTGAAGATGTTCATCCGAGCGCATAACGAAAATTGCAAACAGATTGAATATGAAAAAAAGAGAGCAGATAAAGAAGCAGAGAAACAAGGTGGTAAAAAGGACTCTGAACATAAGATAAGGAACATGAAGAGTGGTAATAATAGTAAAAGATGA 4893 0.4067 MALFRKFFYKKPPDGLLEISERVYVFDYCFTSDVMEEDEHKVYIEGIIAQLHGHFPDASYMVFNMREGESPSPISNILSDYDMMVIDYPRQYEGCPLLTMETIHHFLKSGENWVQLGRQNLILMHCERGGWAVLAFMLAAFLIYRKQFTGEQKTLDMIYKQAPRELLQFMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVILRLVPKMDGEGGCRPIFRIYGQDPFMAADRTPKVLFSTPKRSKLVRYYKQADCELVKIDINCHVQGDVVLECISLDSDLDRENMMFRVMFNTSFIRSNILMLNRDEIDILWNTKDNFPKNFRVEALFSDMEASSSVIPMDMPCIGEKEGLPVEAFAKVKEMFNNVDWLDSNTEVANVLQQITASNMLLERLDCGISSPTRKLLKETLSGGFKLDLKTQSNMKISPSAAHSRSITSFESSSYALMEKIDQFESKALPENYIKPLALKDIGPSRPKESLENDTNFPTSTEQSIPLIEPLLDTSSMEKNTKPSKSEGMDIDSLEQTESLDDDTNFPTSVAQGKQSIPSIEPSTDANSRKENIGLLESKVKEIESLDMKAMPENDGRFIFEPQTQLEIEDGLMVKEIEPLESKALPESNTDTLAPMDQEKQPIPLTEISTDSNSTEIQIESLESKKILEDVTMFPVSVAQGKKLTPLNEPSLGEKDGLLELKKKEIESLGSIALLENDRRSKFEPKVLPEIEMKGPTSEVQEKLSMSIFESSEVTPVKKKIETLESKASPENSKSLALVDQEKQTIPSSGLSTHSISTDKIEPFESNMLLENVTNFPVSVAQGKKSTTPFVELSIDANSAKKKYGPESKEKDTEPLESKALLENDDMYSTSKDVNSVKKKIGSLESKEKDTESLESKALLENNDIYSTSKDTGSLESKALLENDDNHSTSISHRKQSIPLAEPSMDVNSMKKESVELESEMLSENDIKSLTSTIQRKQDSPSLGLTTMLHDHAPMGNIIQVTEEVTVSTPSSTSVPLASSSSPTLLPSKVDALSAMQKTCQSFVPPPPPPPHPQNEPNSKLMQPILTKYCENAMHDKGRKSLVTPPPPPPLPATSLSTVVDSFKGPPPPPLPPPLSTNKSAASTGKISSCSIPPPPPPAPRHCSTTPAPTLTASAPPPPPPPLSKNPDVPSKPVPPPPSPPTTKSDTALLQPHAPPVPGPPGVPFGAKGRGLFRANPKGPSQTKRSNLKPYHWLKLTRAVHGSLWAETQKLEEACRAPEFDMSELESLFSAAAPDHGKEGNSNRRTSRQKVDKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDSVLYVDQVENLIKFCPTKEEMEQLKAYTGDKDNLGKCEQFFLEMMKVPRVENKLRVFSFKMQFCSQVKDLRRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLNFPKDLVHLEGSTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEWFCQILKEFLSDAEAEVRSLAQLYANVGRNADALALYFGEDPARVPFEQVVSTLLNFVKMFIRAHNENCKQIEYEKKRADKEAEKQGGKKDSEHKIRNMKSGNNSKR 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1030 1630 SMART it6_source 1211 1630 IPR015425 -
Lal25g1030 1630 Pfam Formin Homology 2 Domain 1215 1584 IPR015425 -
Lal25g1030 1630 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 534 565 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 836 855 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 474 567 - -
Lal25g1030 1630 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1265 1284 - -
Lal25g1030 1630 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1212 1610 IPR015425 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 759 791 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 483 516 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1124 1138 - -
Lal25g1030 1630 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1600 1623 - -
Lal25g1030 1630 Coils Coil 1585 1605 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 821 889 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 916 936 - -
Lal25g1030 1630 Gene3D - 196 341 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1072 1222 - -
Lal25g1030 1630 PANTHER FORMIN-J 1120 1622 - -
Lal25g1030 1630 PANTHER FORMIN-J 1 775 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1036 1051 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 872 889 - -
Lal25g1030 1630 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1034 1054 - -
Lal25g1030 1630 SMART PTEN_C2_2 197 337 IPR014020 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1600 1630 - -
Lal25g1030 1630 Gene3D Formin, FH2 domain 1231 1623 IPR042201 -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 616 648 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 1145 1177 - -
Lal25g1030 1630 MobiDBLite consensus disorder prediction 762 791 - -
Lal25g1030 1630 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1127 1603 - -
Lal25g1030 1630 Gene3D Protein tyrosine phosphatase superfamily 13 191 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1030 Lal-Chr25 13590424 13602610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1030 1 415 FH2 protein (formin) Gene Family AT2G25050 67.943 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1030 - - aprc:113848213 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1030 25 13590424 13602610 Lal25g1030 25 13590424 13602610 ECH
Lal8g1574 8 20051974 20062995 Lal25g1030 25 13590424 13602610 LSH