Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1002 ATGGCACTCATCACTGGCACTACACACCACCACCACCACCCTTTGTTGCCATTCATTATCCCTTTCTTACTATTTGTTGTTGATGCTGCTTCTGACACAGAATTGCTCCTCAAATTTAAGGAATCCCTTCAAAACAATCAAGTATTATCCTCTTGGAATGCATCTACACCTCCATGTTCAGCAGGCAATTCCCATTGGATAGGTGTTCGTTGCTATAATCAACATATATGGGGCTTGAAGCTTGAGAATATGAGGCTCAAGGGTGTTATTGATGTGGATTCACTCACCACATTACCATATCTCAGAACCATAAGTTTCATGAACAATGAATTTCAAAGCACATGGCCAGAGTTAGATAAGCTAGTAGGTTTAAAGAACATATACCTTTCAAATAACAAGTTCTATGGAGAGATTCCTGGTAAAGCATTTGAAAATATGAAATGGTTGAAAAAAATTCACTTGTCAAACAACATATTCACTTGTGATATTCCAACGTCCCTATCATATTTGACTAGGCTTATCGATTTGAGGTTGGATGGAAACAAATTCAGTGGTCACATTCCCCCTTTTCACAAAACATTGAAATCATTAAATGTAGCTAATAATCAATTAGTGGGAGAAATACCAGCCATCCTTAGTAACATGCCTGCTTCATCTTTTTCTGGCAATCAAAGGTTATGTGGAGCCCCATTGGAAGAATGCTCCAAAAAAAATCCAGCAATTGCAAAGATTATAGTGATTGTAGTACTTGTTGCTGCGGCATTGGTTGTGATCGGTGTAATAATGTTCGTCCTTCGTAGAAGAAGAAAACAACAACAATCAACAGATTCTATGGAGAATCCAGGAGCAGGAGCATCAAACAACCAAAAGAATAGATCAGAAACATCATCATCAGATGATGCGAATAGTGATCAAAGGTCAACAAGGTCTCAATGCAGTTCCACAAGATCAAAAGGAGAAAACATGAAGTTATCATTTGTGAGGGATGATAGGGAACCATTTGATCTTCAAGAACTTCTAAGAGCTTCTGCTGAGATATTGGGTAGTGGTTGTTTCAGTTCATCATACAAAGCAGCTTTGACAAATGGACCAATGATGGTTGTGAAGAGGTTCAAACAAATGAACAATGTTGGAAGGGATGAGTTTCAAGAACACATGAGAAGGATTGGAAGGTTGAGTCATCCTAATCTTCTTCCACTTGTTGCTTACTATTATAGGAAGGAGGAAAAGCTCTTGATATCTGACTTCGTTCACAATGGCAGCTTGGCTGTTCGCCTTCACGGATACCAAGCTCTAGGGCAACCAAGCCTTGATTGGCCAAGCAGGTTGAAAATTGTGAAAGGGGTAGCAAAAGGTATTGAATATCTATACAAAGAGATGCCAAGCCTAATTGCACCACATGGACATCTTAAATCTTCTAATGTTCTTCTAAGTGAGTCTTTAGAGCCAATCCTAAATGACTATGGATTGGTGCCAATTATTAACCAAGATCTTGCTCCTGATTTGATGGTTATATATAAATCCCCCGAGTATTTGCAGCATGGTCGTGTTACAAAGAAGACAGATGTTTGGAGTCTTGGTATACTCATTTTGGAGATCTTAACAGGAAAGTTACCTACTAGTTTTCTACAACAATGTCATAATCAAGGTAAAGGAAGTGAGTTGAGTTTGGCAAATTGGGTAGATTCAATTGTCCCAGAAGAGTGGAGTAGTGAGGTGTTTGACAAAGACATGGGTGTAGACAAGAACAATGAGGAAGAAATGGGTAAGCTTTTGAAGATTGCATTGGCTTGTTGTCAAGTTGATGTGGACAAGAGATGTGATTTGAAAGAAGCTATAGATAAAATCCAACAAGTAAAAGAAACAGATAATAATAGTAATAATGAGGATGAAAAAATTGAATAA 1905 0.3816 MALITGTTHHHHHPLLPFIIPFLLFVVDAASDTELLLKFKESLQNNQVLSSWNASTPPCSAGNSHWIGVRCYNQHIWGLKLENMRLKGVIDVDSLTTLPYLRTISFMNNEFQSTWPELDKLVGLKNIYLSNNKFYGEIPGKAFENMKWLKKIHLSNNIFTCDIPTSLSYLTRLIDLRLDGNKFSGHIPPFHKTLKSLNVANNQLVGEIPAILSNMPASSFSGNQRLCGAPLEECSKKNPAIAKIIVIVVLVAAALVVIGVIMFVLRRRRKQQQSTDSMENPGAGASNNQKNRSETSSSDDANSDQRSTRSQCSSTRSKGENMKLSFVRDDREPFDLQELLRASAEILGSGCFSSSYKAALTNGPMMVVKRFKQMNNVGRDEFQEHMRRIGRLSHPNLLPLVAYYYRKEEKLLISDFVHNGSLAVRLHGYQALGQPSLDWPSRLKIVKGVAKGIEYLYKEMPSLIAPHGHLKSSNVLLSESLEPILNDYGLVPIINQDLAPDLMVIYKSPEYLQHGRVTKKTDVWSLGILILEILTGKLPTSFLQQCHNQGKGSELSLANWVDSIVPEEWSSEVFDKDMGVDKNNEEEMGKLLKIALACCQVDVDKRCDLKEAIDKIQQVKETDNNSNNEDEKIE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1002 634 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 628 - -
Lal25g1002 634 Coils Coil 609 629 - -
Lal25g1002 634 MobiDBLite consensus disorder prediction 275 321 - -
Lal25g1002 634 PANTHER LRR RECEPTOR-LIKE KINASE 16 628 - -
Lal25g1002 634 SUPERFAMILY L domain-like 56 216 - -
Lal25g1002 634 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Lal25g1002 634 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Lal25g1002 634 Gene3D Transferase(Phosphotransferase) domain 1 417 634 - -
Lal25g1002 634 ProSiteProfiles Protein kinase domain profile. 341 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g1002 634 Pfam Protein kinase domain 344 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g1002 634 MobiDBLite consensus disorder prediction 271 324 - -
Lal25g1002 634 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Lal25g1002 634 Gene3D Ribonuclease Inhibitor 118 241 IPR032675 -
Lal25g1002 634 Gene3D Ribonuclease Inhibitor 25 117 IPR032675 -
Lal25g1002 634 SUPERFAMILY Protein kinase-like (PK-like) 345 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1002 Lal-Chr25 13320172 13324722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1002 15 628 Receptor kinase-like Gene Family AT5G35390 50.235 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal25g1002 Pkinase 4.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1002 - - ccaj:109803310 821.617