Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1001 ATGGAAGGCGGTGCGAAATTCCCTGGAATATTATTAGACCTGAACAAGCATCAAAATGATTATGACTTCTCTGAAGGAAGTGGATTTTATCATAAGCTTGATCTGAATGATGGTACCAATATGTCCATTGACAACTTGCAAACTACCAATGGTGGAGGATCTGTTGTCATGTCTGTTGGCAAAAGCAGCGTCGGCTCCAATGATTCCCACACTCACATTTTGAACCACCAAGGCTTGAAGAGACTTCCCAATGATAACTACTCTATTGCTCACAGTGTCAATCATCGAGGAAGAGTCACACATGCTTTGAGTCATGATGCTTTGGCTCAGGCTCTCATCGACACTAATTCCCAAGCTGAGGTATGGGTGAGCCTTTTGCGCAAGGGGCTTTCAACAAACTTTACAGAGGCACTTAAAATGAGGCCTGAAAATGATCCACCAAAGGCTCAGTTCATGGAACAACAGTTTCAGCAGGAGGTCATGATGTTGGCTACACTAAAGCATCCTAAAATAGTTCGCTTCATTGGTGCGTATCGTAAGCCAATGGTGTGGTGCATTGTGACAGAATATGCCAAAGGTGGTTCAGTTCGTCAGTTTTTAATGAAGCGACAAATCCGATTAGTTCCCCTCAAATTGGATGTCAAGCAAGCTTTGGATGTTGCAAGAGGGATGGCATATGTTCATGGCCTTGGACTGATCCACAAGGACTTGAAATCTGATAATCTTTTCATTTTTGGTGACAAATCTATTAAAATTGCTGACTTTAGAGTTGCCAGTGTTAGATTAGACGATGGAGAGCTTCCAACCACCTGA 813 0.428 MEGGAKFPGILLDLNKHQNDYDFSEGSGFYHKLDLNDGTNMSIDNLQTTNGGGSVVMSVGKSSVGSNDSHTHILNHQGLKRLPNDNYSIAHSVNHRGRVTHALSHDALAQALIDTNSQAEVWVSLLRKGLSTNFTEALKMRPENDPPKAQFMEQQFQQEVMMLATLKHPKIVRFIGAYRKPMVWCIVTEYAKGGSVRQFLMKRQIRLVPLKLDVKQALDVARGMAYVHGLGLIHKDLKSDNLFIFGDKSIKIADFRVASVRLDDGELPTT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1001 270 SMART serkin_6 117 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g1001 270 SUPERFAMILY Protein kinase-like (PK-like) 111 264 IPR011009 -
Lal25g1001 270 Pfam Protein tyrosine and serine/threonine kinase 121 259 IPR001245 GO:0004672|GO:0006468
Lal25g1001 270 ProSiteProfiles Protein kinase domain profile. 107 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g1001 270 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 120 - -
Lal25g1001 270 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 140 262 - -
Lal25g1001 270 PANTHER SERINE-THREONINE PROTEIN KINASE 2 120 - -
Lal25g1001 270 PANTHER SERINE-THREONINE PROTEIN KINASE 140 262 - -
Lal25g1001 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lal25g1001 270 Gene3D Transferase(Phosphotransferase) domain 1 98 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1001 Lal-Chr25 13300642 13301529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1001 15 270 MAP Kinase Kinase Kinase AT4G31170 54.225 3.50e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal25g1001 PK_Tyr_Ser-Thr 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1001 - - lang:109350762 401.749