Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0978 ATGGATTCGGATCCGGGGAAGCTTTTCATTGGTGGGATTTCATGGGACACTAACGAGGACAAGCTCAGTGACTATTTCGGAAACTACGGTGATGTCTCTCACGCTTCTGTTATGAGGGACAAGAACACAGGCAAGCCCAGAGGCTTTGCCTTCGTCGTTTTTTCTGATCCATCTGTTATTGATAGGGTTCTTGAAGATACCCACGTTATTGATGGGAGAACGGTTGATGCCAAGAGAGCCCTCTCAAGAGAGGATCAACAGATTTCTTTTAATTCTAAAAGTGGTAATTCCAACTCAGCTAGGAACTCTGGAAATGGTGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTACCTCCTACCCTGACTGAAGAAAAATTCCGTGAATACTTTGAGGCGTATGGCCAAGTAACCGATGTAGTAGTCATGTATGACCAGAATACGGGACGACCTCGAGGATTTGGGTTTATTTCTTTTGATAATGAAGACGCAGTTGACAGTGTTTTGTACAAGACATTTCATGAATTAAGTGGTAAAAATGTGGAGGTAAAACGCGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTAACCGAATCGGTGGTGCAGAAGGCGGTGGGTATCAGGGGTATGGGAATTCAGGAGACAACCAAAATGTGTATGATGGTCGGATGGATTCAAGTAGGTATATGCAGCCTCAGAACAATGCAAGTGGTTTCCCACCTTATGGTTCTTCTGGGTATGGGTATGGTGCGGGTAATAATGGCATTGGTTATGGTGCCTATGGAGGTTATAGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCATCATATGGGAATCCAAATGTTCCTAATGCTGCTTATGCTGGTGGTCCTCCAGGTGGCCCAAGGAGTTCATGGTCTGCTCAGCCCCCCTCTGGTTATGGGTCTGCAGGCTATGGGAGCACTGCTCCTTGGGGTGCTCCAAGCGGTGGTGCTGGATCTGGTAATGGTGGCCCCGGTTCAGCACCCACAGGTCAATCCCCAAGTACAGTTGCTGGATATGGGAATCAAGGTTACGGATATGTTGGGTATGGTGGAAGTGATAGTTCTTATGGGAATCCAGGTGCTTATGGTGCTGTTGGAGGGCGTTCCGGGAATGCCCCAAATAGCGAGCTACAAGGCAGTGGTGGCAGCTATGTGGGAAGTGGCTATAGCGATTCAAATGGAAACGCGGGGTACGGAAATGCAGCATGGAGGTCTGAACCGACACAAGCATTTGGAAATTATGGGACTCCTCACGGAAATGGTGCTGCCCATGCTAGGCAAGGTGGTTATGGTGGTGCTCAGTCCCGACAAGCCCAACAGATGTAG 1359 0.4842 MDSDPGKLFIGGISWDTNEDKLSDYFGNYGDVSHASVMRDKNTGKPRGFAFVVFSDPSVIDRVLEDTHVIDGRTVDAKRALSREDQQISFNSKSGNSNSARNSGNGGNIRTKKIFVGGLPPTLTEEKFREYFEAYGQVTDVVVMYDQNTGRPRGFGFISFDNEDAVDSVLYKTFHELSGKNVEVKRALPKDANPGASNRIGGAEGGGYQGYGNSGDNQNVYDGRMDSSRYMQPQNNASGFPPYGSSGYGYGAGNNGIGYGAYGGYSGATAGYGGPAGASYGNPNVPNAAYAGGPPGGPRSSWSAQPPSGYGSAGYGSTAPWGAPSGGAGSGNGGPGSAPTGQSPSTVAGYGNQGYGYVGYGGSDSSYGNPGAYGAVGGRSGNAPNSELQGSGGSYVGSGYSDSNGNAGYGNAAWRSEPTQAFGNYGTPHGNGAAHARQGGYGGAQSRQAQQM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0978 452 MobiDBLite consensus disorder prediction 420 452 - -
Lal25g0978 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal25g0978 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 171 IPR000504 GO:0003723
Lal25g0978 452 SUPERFAMILY RNA-binding domain, RBD 111 216 IPR035979 GO:0003676
Lal25g0978 452 MobiDBLite consensus disorder prediction 211 238 - -
Lal25g0978 452 Gene3D - 86 209 IPR012677 -
Lal25g0978 452 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal25g0978 452 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lal25g0978 452 Gene3D - 5 85 IPR012677 -
Lal25g0978 452 MobiDBLite consensus disorder prediction 86 109 - -
Lal25g0978 452 MobiDBLite consensus disorder prediction 378 397 - -
Lal25g0978 452 MobiDBLite consensus disorder prediction 86 111 - -
Lal25g0978 452 MobiDBLite consensus disorder prediction 291 347 - -
Lal25g0978 452 MobiDBLite consensus disorder prediction 382 397 - -
Lal25g0978 452 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lal25g0978 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal25g0978 452 MobiDBLite consensus disorder prediction 189 238 - -
Lal25g0978 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lal25g0978 452 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 450 - -
Lal25g0978 452 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0978 Lal-Chr25 11277435 11280674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0978 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 22.680 1.38e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0978 K14411 - gmx:100811267 540.806