Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0809 ATGACTTTGCTCACCTTCCGATCGGGCTCAAATTTGGACAGAGGGTTCATGACATTCGGTTGCAGTAAGATGGAGATAAAGTTGATAGAGAATCCTACCAACATGCAAGTAACTTACTCAAAGGGAGGCAATGGTGTCTTCAAGAAAACTCATGAACTTAGTGCTCTCTATGATACTAAGTTGTCTGTGAGCAAAGATTGCAACAGACAACGTGAATCAAACTTCTGCTCAGATGATGTTTATCACCATGCTGTGGTGAAGGTGAAGGCTGTGCTATTAGTTATTGCTATTCAAATTGGAAGTTATGTTGTGACCATGATGAGCATTGGGGTCATTCTTCCAATTGGGCTTCAAATGTCAAGTGGAGATAGTTAA 375 0.408 MTLLTFRSGSNLDRGFMTFGCSKMEIKLIENPTNMQVTYSKGGNGVFKKTHELSALYDTKLSVSKDCNRQRESNFCSDDVYHHAVVKVKAVLLVIAIQIGSYVVTMMSIGVILPIGLQMSSGDS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0809 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 62 IPR002100 GO:0003677|GO:0046983
Lal25g0809 124 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Lal25g0809 124 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Lal25g0809 124 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Lal25g0809 124 SUPERFAMILY SRF-like 22 80 IPR036879 GO:0003677|GO:0046983
Lal25g0809 124 Gene3D - 31 91 IPR036879 GO:0003677|GO:0046983
Lal25g0809 124 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0809 Lal-Chr25 6897854 6898921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0809 23 63 MADS-box Gene Family AT3G54340 60.976 1.35e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal25g0809 SRF-TF 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0809 K09264 - gmx:100784496 64.6994