Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0788 ATGGAGAAGACAAAATTGTTTCAAACACCGACAGAACCAGAAGTGCCCCTTGTTTCAAAGAGGGGAGGGCGGGTTATTCACATTTCATTTGATGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTATAGCGAAACTGATTTCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGTAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGGTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCTATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTGCGTCGCCGTAGTAAATAG 573 0.4415 MEKTKLFQTPTEPEVPLVSKRGGRVIHISFDVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAIAKLISKEGKSATLKLPSGEVRLISKNCSVTVGQVGNVGVNQKSLGRAGSKCWVGKRPVVRGVVMNPVDHPYGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0788 190 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 42 187 - -
Lal25g0788 190 MobiDBLite consensus disorder prediction 174 190 - -
Lal25g0788 190 MobiDBLite consensus disorder prediction 145 190 - -
Lal25g0788 190 SMART Ribosomal_L2_C_2 48 167 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal25g0788 190 Gene3D Ribosomal protein L2, domain 3 111 189 IPR014726 -
Lal25g0788 190 SUPERFAMILY Translation proteins SH3-like domain 48 187 IPR008991 -
Lal25g0788 190 Pfam Ribosomal Proteins L2, C-terminal domain 48 165 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal25g0788 190 ProSitePatterns Ribosomal protein L2 signature. 132 143 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lal25g0788 190 TIGRFAM rplB_bact: ribosomal protein uL2 48 189 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Lal25g0788 190 Gene3D - 18 110 IPR014722 -
Lal25g0788 190 PANTHER RIBOSOMAL PROTEIN L2 42 187 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0788 Lal-Chr25 6761766 6762669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0788 48 150 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.228 8.36e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0788 K02886 - ghi:121226617 312.383