Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0714 ATGAAGTCGTTGTCACTGGATCATTGGAGGAGTTACTTCCGGTCAGAGAATTTGGATATATTTGATATAATTGACCATGCCATCATGGTGGCAGCTTCTGATTGTCCAAAAGAGTTCAGGTTGAGAAGGGGTGGGATTGCAGAGAGGTTATTCTCTTTCAAGTTGACACGTTGTGTTGGGTGTGATAGGGTGGAGTTGTTTGTGTCTGTTGGTGGTGGTGATGATGAATACGACGATTTTGATGGAGGTTGCAAGAGTGGTTTTGATAGAGATGATGATGGTGTGAAGTTTAAGGCAGGTGCAACCAAAGAGAGTAAGGTCAATGGTGGTGATGGCAGAGACGATCAAGGAGATATGGATGTGAACCATTTTAGCAATTTTAGCTTTGGAGATGCTGAGGTATTGACTGATGAGATTGAAGAAGAGTCTCAGTATGTTAAGGAGGTTTTGAGGATCAAAGACATTCTGCTTAACCGTGAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTGCAGCTGATGGAACTCACTGTGGATCGTCTAAAGGCTACTGAAATTGGAAAAGCTGTCAATCCTCTACGAAAGCATGGATCAAAGGAAATTCGCCAACTCACACGAACTCTTATCGATGGCTGGAAAGAAATAGTTGACGAGTGGGTCAAGGCTACGACTACTACTGCTATCGCAGCTTCAGAAGGTACTCCAGATTCAGTAAATATATCAGTTGTTGATGATGATGAAGGACTTCCATCACCTCCTATGGATGAAGGAGCTTTCTTTGTTGCTCAAGCTGAAACTGAGTTGTACTTTTCCCTGTTGCATGTCAAATATCTGGGTGATGCAAAGTTCTTTGACGGCATAGATGATTATGGAAATCCTCGACAGAGTGGACAATTCAGCAAGAACCGCGAAAATGCTAGAAAGCCTTCTGAGGACAGTCACACTATAGAAAAGAGGAAATCGCAAGCTTCCGACCAGACAAACATCACTAACAAGGATAGTAAGAGTCAGCTACCCAAGAAAATTGAGGTGGCTGTGAGGTTAAATAAGCCTGTAACTGCAGATTCTGGCCCAGGCAGACCACCGAAATCAAGTATGCACCGAAAAAGCAACATGGAGCCGAAGATACAGCAAACAATAGACAACACTATTACAAAGAGGCCACCCATTGGTCAGCAAGACAAATCCAAGTATTCGGATGATGCTGCAGTCCAAGTGAAGCTAGAAGCTACCAAGAGAAAACTTCAGGAGCATTATCGACAAGCTGAGAATGCTAAGAGACAGCGTACAATACAAGTTATGGAATTGACTGATCTCCCAAAACAAGCGATTGTCCACCGAAATCCACATTTCAAACCTGGAAATAACAATAGGCATTGGGGGGCTCATCCGCGACGATAG 1410 0.4348 MKSLSLDHWRSYFRSENLDIFDIIDHAIMVAASDCPKEFRLRRGGIAERLFSFKLTRCVGCDRVELFVSVGGGDDEYDDFDGGCKSGFDRDDDGVKFKAGATKESKVNGGDGRDDQGDMDVNHFSNFSFGDAEVLTDEIEEESQYVKEVLRIKDILLNREEESDSVLFESLRRLQLMELTVDRLKATEIGKAVNPLRKHGSKEIRQLTRTLIDGWKEIVDEWVKATTTTAIAASEGTPDSVNISVVDDDEGLPSPPMDEGAFFVAQAETELYFSLLHVKYLGDAKFFDGIDDYGNPRQSGQFSKNRENARKPSEDSHTIEKRKSQASDQTNITNKDSKSQLPKKIEVAVRLNKPVTADSGPGRPPKSSMHRKSNMEPKIQQTIDNTITKRPPIGQQDKSKYSDDAAVQVKLEATKRKLQEHYRQAENAKRQRTIQVMELTDLPKQAIVHRNPHFKPGNNNRHWGAHPRR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0714 469 SMART TFS2_5 146 221 IPR003617 GO:0005634
Lal25g0714 469 Coils Coil 408 431 - -
Lal25g0714 469 ProSiteProfiles TFIIS N-terminal domain profile. 147 222 IPR017923 -
Lal25g0714 469 MobiDBLite consensus disorder prediction 307 324 - -
Lal25g0714 469 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 232 IPR035441 -
Lal25g0714 469 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 467 - -
Lal25g0714 469 MobiDBLite consensus disorder prediction 297 380 - -
Lal25g0714 469 MobiDBLite consensus disorder prediction 446 469 - -
Lal25g0714 469 Pfam TFIIS helical bundle-like domain 171 219 IPR017923 -
Lal25g0714 469 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 467 IPR044805 -
Lal25g0714 469 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 227 IPR035441 -
Lal25g0714 469 CDD TFIIS_I 147 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0714 Lal-Chr25 5914558 5918982 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal25g0714 Med26 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0714 - - gmx:100799367 604.364