Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0708 ATGCCTTACCTTGTTCGAGAGAATCTCTCAATCAGCAACATCGCCGACGCAGCGGATATTCTCCAAAACGGCACCGTTTCAATCACTCATATCCTCTCCGTTCTCAGCTCAGCCTCTATCTCCTTCTTCTCCGACTGGCGTAACGGCCTCACCATCCCTTCCAAGGAGATCAAAAAACTCTACGCCGGAGACGCCGCTGATGGTGGCGCCAAAACCGCCTTGTCGCCGGAAAAGCTTCTATACTCGTTGGAGTACGCCGGTAACGATTTAAAGATAGTACGGATGGCGGTTCCGATTAGGGATACTGAGAATGAGGATTTGTTGGATTACTTGGAGGTTTGCATCGATTTCATTGATCGGAGTAGGAAGGAAGGTTCTGTTTTGGTTCACTGTTTTGCAGGAGTTTCTAGAAGTGCGGCAGTTATTACAGCATATTTGATGAGAACTGAACATCTATCTCTAGAAGATGCCCTTGAATCATTAAGGCAAAGCTGCGAATTTGTTTGCCCCAATGATGGTTTTTTAGAGCAGTTAAAACTGTTCGAGGAGATGGGCTTCAAGGTTGATTATACTACCCCTATATACAGGCGCTTTCGTCTTAAAATACTAGCATTTCGGATCCCCACAGACTTCCTTATTCCACACCCTGAGCTTGTCCTTGAGGGTCTTCATTTTGATCTTAAATTGAAAGCCTTTAGCTTCTCCGTGAGGAAAAGGGGTAACCTGCAGATGTGGCAAGAAGCATGGATTGCATATGGAAAGGCTCCATTAGTAAAAGAAGTGATAAAACAGATAAGGAAGGGGAAAAGAAGGCTAAGAGATCATTTCTCTGTGTCTGGAATAGACAGTTCTAAACTTGGTGCAGACCCTGGTATGCCTGTCCAAATTTCTTCAGATGTTGAAGAAGCTACTAAAGTAGAAAATAAGCATAGACTTACATATCGCTGTAAGAAGTGCCGACGTGTTGTTGCATTGCAAGAAAATGTGGTAGGTCATACTCCTGGAGAGGGTGAGACATCCTTTGAGTACAAGCGGAGAAGTGGCAACCCTTTTGACAACTCTAATGAATCTGAGTGTTCATCCGTATTTATTGAACCTCTACGATGGATGAAAGCTGTTGAGGAAGGCGCATTGGAGGGAAAGCTATCATGTACTCAATGTGATGCTCGTTTGGGATACTTCAATTGGACAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCGGCTTTTCAACTCCACAAAGGCCGTGTAGATATTAGCCGTGTGTAA 1272 0.4473 MPYLVRENLSISNIADAADILQNGTVSITHILSVLSSASISFFSDWRNGLTIPSKEIKKLYAGDAADGGAKTALSPEKLLYSLEYAGNDLKIVRMAVPIRDTENEDLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRTEHLSLEDALESLRQSCEFVCPNDGFLEQLKLFEEMGFKVDYTTPIYRRFRLKILAFRIPTDFLIPHPELVLEGLHFDLKLKAFSFSVRKRGNLQMWQEAWIAYGKAPLVKEVIKQIRKGKRRLRDHFSVSGIDSSKLGADPGMPVQISSDVEEATKVENKHRLTYRCKKCRRVVALQENVVGHTPGEGETSFEYKRRSGNPFDNSNESECSSVFIEPLRWMKAVEEGALEGKLSCTQCDARLGYFNWTGIQCSCGSWITPAFQLHKGRVDISRV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0708 423 Gene3D Protein tyrosine phosphatase superfamily 4 204 IPR029021 -
Lal25g0708 423 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
Lal25g0708 423 Pfam Dual specificity phosphatase, catalytic domain 90 183 IPR000340 GO:0008138|GO:0016311
Lal25g0708 423 CDD DSP_DUSP12 4 189 - -
Lal25g0708 423 SMART dsp_5 1 184 IPR020422 GO:0006470|GO:0008138
Lal25g0708 423 PIRSF DUSP12 283 423 IPR016278 GO:0006470|GO:0008138
Lal25g0708 423 PIRSF DUSP12 3 45 IPR016278 GO:0006470|GO:0008138
Lal25g0708 423 PIRSF DUSP12 83 219 IPR016278 GO:0006470|GO:0008138
Lal25g0708 423 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 419 - -
Lal25g0708 423 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 188 IPR029021 -
Lal25g0708 423 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 108 163 IPR000387 GO:0016311|GO:0016791
Lal25g0708 423 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 187 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0708 Lal-Chr25 5767973 5775987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0708 56 183 Protein tyrosine phosphatase (PTP) family AT3G06110 32.847 1.30e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0708 K14819 - nnu:104607791 468.774