Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0663 ATGGAAATGGAAGCTTTTGCTTCACCTTCTTCTCTTGTTTTGGATAGGGAAAGGAAAGAGGTTGTGGAGGGTCCTTGTAAATTGGAACAAAAGGGTGTGTGCTATGAGAGAAGCATTGATGCTTTGAGGAATCATAGTGAGGCAGAACGAAAGAGGAGAGCAAGAATAAATTCACATATTGATACTCTTCGCTCTGTGATTCCTGGTGGTAAGAAGATGGACAAAGCAACCTTACTAGCTGAGGTTATTGTACATTTAAAAGAGCTGAAAGCAAATGCAGCACAAGCATGTGAAGGCTTAATGATACCAAAGGACAATGATGAAATAAAAGTTGAAGAGCAAGAAAGTGGGTTGAATGGTTTCCCTTATTCAATAAGGGTATCCCTATGTTGTGAATATAAACCTGGATTACTATCTGATATTAGACAACAACTTGATGCACTTCATCTTATGATAATAAGGACAGAGATGGCAACATTAGGAGGTAGAATGCAGAATGATTTTGTGATAATTAGCTGCAAAGAACAGAATTTTGAAGATGCCGAATACCGGTATCTTCTGGTCGACTCAGTGCACGAAGCTCTTAGATCTGTATTGGATAGATTTTTGGTTTCAGAGGACATTTTAGGAACCAGAAAAAGAAGGAGGATTTCTATATTCAGTTGA 666 0.3829 MEMEAFASPSSLVLDRERKEVVEGPCKLEQKGVCYERSIDALRNHSEAERKRRARINSHIDTLRSVIPGGKKMDKATLLAEVIVHLKELKANAAQACEGLMIPKDNDEIKVEEQESGLNGFPYSIRVSLCCEYKPGLLSDIRQQLDALHLMIIRTEMATLGGRMQNDFVIISCKEQNFEDAEYRYLLVDSVHEALRSVLDRFLVSEDILGTRKRRRISIFS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0663 221 Gene3D - 36 98 IPR036638 GO:0046983
Lal25g0663 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Lal25g0663 221 SMART finulus 46 95 IPR011598 GO:0046983
Lal25g0663 221 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 220 - -
Lal25g0663 221 PANTHER TRANSCRIPTION FACTOR BHLH30 6 220 IPR045847 GO:0003700|GO:0006355
Lal25g0663 221 Pfam Helix-loop-helix DNA-binding domain 44 89 IPR011598 GO:0046983
Lal25g0663 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0663 Lal-Chr25 5274248 5277932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0663 27 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.755 2.92e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal25g0663 HLH 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0663 - - lja:Lj3g3v2848980.1 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0663 25 5274248 5277932 Lal25g0663 25 5274248 5277932 ECH