Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0648 ATGCCTTCTCAGAAGCGTTCCTTCCCCTTCTCTATCAACGATAATGACACTTTTTCACACCTTTCTAACCATCACCTACAACAACAACAACCTAAGCAGCACGAAGATGAAGACGAGGAAAACGAGGAGGTTGATGAGGAGTTAGAAGAAGCAGAAGAAGAAAAAGATTATGGGGATGAAGAAGAAGCGGAAGAAGATGAAGAAACATGTCAACACCAGAACGATAACAATGATGAAAAACCACAAAATTCTGATGAAACCCCATCTTCTGACTCTGATGATAAATCTGAGTTTGTATATATAGAACTTCAGGAAGTTCGCAAAGATGTCCAGTGTCCAATTTGCCTTGGTATCATAAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGATTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCTGAACTATGATGCCCTTATTGCTTCTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAACTTGAATTTTGTGAAGACGAGAAAAGCCGCAATAAGCAGATTCAAGCGTCAATTGCTAAAGTAGTTCAACGACAATTTGAATCAGCGGGAAAGAGACGTAAAGATACACCAGGTGCATCAGTGACAAGATCACAGTGCAATCAACGAAATGTTTATTCCTGGAGACAGAACCAAGTGATTGATATTCAAGGGTCTGATGATAATGAGGAGGAAAATGACAATAATGAAAAGGAGTCATCTTCTGACGATGAGAAGTGTACAGAAGCCAGGCAAAGAAAGCGAAAGAGACGGACCAGAGTTCGCCCCTCTCAGCCCTCATCATTGAGGGCAAGTCCTGATGATGGATACATAGAAAGTGATATGGAAATACGTAGTGAAAATCAAGGAACTTTAGGGCAGGTGACAATACCTCATAAACTTACCTGGGGAAGGGGTGGTTTAAGAAGCCATTCACGGTATGGCAGTGGTGGTGGTAGGAATAGCAAAAGTTCCCGCTGTGGTCGATTGTCTAATTTGGTTGATCATCTCCGAAACTTGGATGAAAACACTGATGAGTTCGAAATCCACCTCATGCTTGTTTCGCTGGACAAACAAAGTACACCGATTTTGCAGCAGCCACACCTTTGCTGTCGACCAACTTTGTCTGTCAAGCACCTTTGTGAATTTGTTGCGTGTCAGACGCCATTGGCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCGGCAATACGAAGTGTGAGAAGTCAGCTGATGAGATATCCGATGAGCTAACAACACTGCGTATTGATCCATGCAATGATGAACTGGAAATTCTGCAAGAACATGAATCTCTTGCTGGAATTACATCGAAATGCATATCTAAGATGGAGCATTTGATTCTGGCTTACAGGCGCAAGGAGGCACTATAA 1467 0.4226 MPSQKRSFPFSINDNDTFSHLSNHHLQQQQPKQHEDEDEENEEVDEELEEAEEEKDYGDEEEAEEDEETCQHQNDNNDEKPQNSDETPSSDSDDKSEFVYIELQEVRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDLNYDALIASLYPNIEKYEEEELEFCEDEKSRNKQIQASIAKVVQRQFESAGKRRKDTPGASVTRSQCNQRNVYSWRQNQVIDIQGSDDNEEENDNNEKESSSDDEKCTEARQRKRKRRTRVRPSQPSSLRASPDDGYIESDMEIRSENQGTLGQVTIPHKLTWGRGGLRSHSRYGSGGGRNSKSSRCGRLSNLVDHLRNLDENTDEFEIHLMLVSLDKQSTPILQQPHLCCRPTLSVKHLCEFVACQTPLAVEEVEILAVKGCGNTKCEKSADEISDELTTLRIDPCNDELEILQEHESLAGITSKCISKMEHLILAYRRKEAL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0648 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 182 IPR013083 -
Lal25g0648 488 MobiDBLite consensus disorder prediction 247 301 - -
Lal25g0648 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 486 - -
Lal25g0648 488 MobiDBLite consensus disorder prediction 1 28 - -
Lal25g0648 488 Coils Coil 34 68 - -
Lal25g0648 488 MobiDBLite consensus disorder prediction 73 95 - -
Lal25g0648 488 MobiDBLite consensus disorder prediction 36 72 - -
Lal25g0648 488 SUPERFAMILY RING/U-box 101 163 - -
Lal25g0648 488 SMART ring_2 112 151 IPR001841 -
Lal25g0648 488 PANTHER OS11G0578200 PROTEIN 1 486 IPR044592 -
Lal25g0648 488 CDD RING-HC_RING1_like 112 152 - -
Lal25g0648 488 MobiDBLite consensus disorder prediction 1 95 - -
Lal25g0648 488 Pfam Zinc finger, C3HC4 type (RING finger) 111 151 - -
Lal25g0648 488 ProSiteProfiles Zinc finger RING-type profile. 112 152 IPR001841 -
Lal25g0648 488 MobiDBLite consensus disorder prediction 210 232 - -
Lal25g0648 488 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0648 Lal-Chr25 5031630 5036822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0648 110 280 C3H Transcription Factor Family AT2G30580 26.519 1.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0648 K10695 - gmx:100776547 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0648 25 5031630 5036822 Lal25g0648 25 5031630 5036822 ECH