Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0628 ATGTTTAATATCTCACTAACCTACAAAGAAATGGAGAAAGGTTTAGTGATAGATGAAAATATGTCCAATTTAACATCTGCATCAAGTGAAATAAGTGCTTCTTCTGGATCCAGAAGTAACACAGTTTCTCTCTATCCTCAATACTCCTCCACCTCAACAGATCAAGAACCACTACCCAAAAAGAAGAGAAGTCTTCCTGGTCACCCAGATCCTGAGGCTGAAGTGATAGCCTTAAGTCCAAAGTCTCTAATAGCAACAAACCGTTTTATATGTGAGATTTGTGAGAAAGGGTTTCAAAGAGATCAAAACCTGCAGCTTCATAAAAGAGGGCATAATTTGCCATGGAAGCTAAAGCAAAGAAATAACAAAGAAGCATTAAGAAAGAAAGTATATGTGTGCCCAGAACCAAGTTGTGTTCATCATGACCCATCAAGGGCCCTTGGAGATCTCACTGGAATCAAGAAACATTTTTTCAGGAAACATGGTGAGAAGAAATGGAAGTGTGAGAAGTGTTCTAAGCGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGAACCCTTTTCTCTAGAAGAGACAGTTTTATCACTCACAGAGCCTTTTGTGATGCTTTAGCACAAGAAAGTGTTATAGCAAATGTTACAACAATGAATCCTCACACTCAACTTCTTCATAGCCATGGCTTCCAAGCACCATCACTAGTGAAAAGAGAACAAGGGTTCAATATTCCAACCTCAGAAATTCCACCATGGTTAGTAGGAGAAGCTAACCATGGTCAAGTTTTCAAGCCTATAGATTTTTCCTTAACACCATTTCTCCCTACACATTATGAAAACCCTAACCCTACTACTTTTCTTCCTTCATTCCAATCCAATATCATTACACCTTCTTCTTCTCCTCACATTTCTGCCACAGCTTTGATGCAAAAGGCATCACAAATGGGTGCAACAGTAAGCAAAACAACACCTTCTACAGCAAATCTTAGACCACACTTATTGCAACAGCAGGGTCACGTGCATGAATGTACTACTACAGGTTATAGCAGCTCCTCTTTTATGGCTTCATCTTCACGTGCAGAAATAAGCACTGTTTTCTCTCATGGCTTAGCAGCACCTTATGGGAATAAAGCTGCAATGACCACTGCAAACACTATAGGAACTGATCAAGAATCTTCTCTTTTTCATGATTATATGATGGGTGGTGGTGGTGGTAATAGTGGCACTGTTCATAATGCTAGTGGGTTTGATAACTCATCTTTTGAAGAAGCCATGAGGGGAATGTTTAATAATCCACCAAGAAATGATCATAATAACTTTGATGAGGAACATGTTTCAAAATCAGCACAATCTCAGTTTGGTAATAAAAGCAACAAGGGTGGTGTTGGAGTTAGTGCTAATAATGGTGAAATGACTAGAGATTTTCTTAGTCTTGGAGCATTTTCTCAAAGAGATTTCTTCAATATATCTGGACTTGATCATTTGGATTCTTCATCATATGGCAAACAAAACCATAATCAAGCGCCTTGGCAAGGCTAA 1572 0.388 MFNISLTYKEMEKGLVIDENMSNLTSASSEISASSGSRSNTVSLYPQYSSTSTDQEPLPKKKRSLPGHPDPEAEVIALSPKSLIATNRFICEICEKGFQRDQNLQLHKRGHNLPWKLKQRNNKEALRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESVIANVTTMNPHTQLLHSHGFQAPSLVKREQGFNIPTSEIPPWLVGEANHGQVFKPIDFSLTPFLPTHYENPNPTTFLPSFQSNIITPSSSPHISATALMQKASQMGATVSKTTPSTANLRPHLLQQQGHVHECTTTGYSSSSFMASSSRAEISTVFSHGLAAPYGNKAAMTTANTIGTDQESSLFHDYMMGGGGGNSGTVHNASGFDNSSFEEAMRGMFNNPPRNDHNNFDEEHVSKSAQSQFGNKSNKGGVGVSANNGEMTRDFLSLGAFSQRDFFNISGLDHLDSSSYGKQNHNQAPWQG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0628 523 MobiDBLite consensus disorder prediction 30 72 - -
Lal25g0628 523 Gene3D Classic Zinc Finger 70 137 - -
Lal25g0628 523 MobiDBLite consensus disorder prediction 445 475 - -
Lal25g0628 523 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lal25g0628 523 MobiDBLite consensus disorder prediction 456 475 - -
Lal25g0628 523 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Lal25g0628 523 SMART c2h2final6 89 111 IPR013087 -
Lal25g0628 523 SMART c2h2final6 166 186 IPR013087 -
Lal25g0628 523 SMART c2h2final6 131 161 IPR013087 -
Lal25g0628 523 Gene3D Classic Zinc Finger 144 223 - -
Lal25g0628 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Lal25g0628 523 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 23 502 - -
Lal25g0628 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 502 - -
Lal25g0628 523 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0628 Lal-Chr25 4822830 4827381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0628 17 335 IDZ Gene Family AT1G55110 56.772 3.08e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal25g0628 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0628 K25870 - vvi:100257789 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0628 25 4822830 4827381 Lal25g0628 25 4822830 4827381 ECH
Lal8g0839 8 6098169 6102404 Lal25g0628 25 4822830 4827381 LSH