Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0614 ATGGGTTTTCAACATGGAAATGAGAACTTTCTGGAATGTGCTTCATTATCTGGTTTGAGCACAACAAATGTTTCAGAAATGGCTACAAGTTCTGTGTCTATGGCTCCTTCAGATCATGTAACTAATACTCCTTTTCTTGCTTCTTCTGCTTGGGATTCACTTGTTTCACTCAATCAGGCTCAAACTTTTGGAGGGTCTTCAATGGTTTCTCATGGTGACTTTGGCAACTCATCTTACCCTCCTTTTGTTTTGGAAAATCAGGGAATGAGCAACACCTCTCACCTTGTTCAGTATATGTCTAACTCGAATCTCGGGGATATCGTTTCCGAGGTTCAGTCTTATGCGAGTGGTAACTTCTCAGAAACTGTTGCCACTTTTGGTCAACCTGGGTTTGAAACTGGGTATAGATCAAATTATAATGTGATAAAGGATGGTGGAATTGAAAGTGCTGCAGTAAATGGTGAACAATCTCATGTTGAGAATTCAGTTACTGAAGAGGGTGTCTCAGGATCTGGAACTAGTGGAAATAGAAGAAAGAGAAGTCTTGATCATAATTCTTCTTTCAAACCAAATAAGAATGCTGAGGGTGATCCGCTGAACGATTCTCCCGGGAAGAGCTCTGATGGTGCAAAAGAAGATGAAAAGAAACAAAAAGTTGAGCAGAATAGTAGTGCAGATTTGCACGGTAAGCAACCGGTGAAGCAAGGTAAAGAGAATTCTCAAAGTGGAGAAGCTCCTAACGACAATTTCATTCATGTGCGAGCTCGAAGAGGTCAAGCCACAAACAGTCATAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGCGAATGATGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATCATAAACTATGTGCAATCTCTGCAGCAACAGGTTGAGTTTTTGTCTATGAAACTTGCCACAGTGAACCCAGAACTGAATTTTGATATAGAGAGGATCATGTCCAAGGATATTCTCCGATCCCGCATAGGACACGGAATTGGTGGATATGGTCCTGGCCTAAGCTCATTTCACCCATTTCCAAATGCAACTTTCCAAGGAACCATGTCTAGCATGCCTAGTACATCAACACAATTCCCTCCTTTGCCTGCGACTGTTTTGGATCATGAGTTCCAAAGCTTCTACGGAATGAGATATGATTCCAGTACAGTTCTCGGAAATTTGGAACCCAATGGTAATTGGCAGAATCTTATACTCACTACTTATACACTCGTGATAGAGGGTGAGTAG 1293 0.4169 MGFQHGNENFLECASLSGLSTTNVSEMATSSVSMAPSDHVTNTPFLASSAWDSLVSLNQAQTFGGSSMVSHGDFGNSSYPPFVLENQGMSNTSHLVQYMSNSNLGDIVSEVQSYASGNFSETVATFGQPGFETGYRSNYNVIKDGGIESAAVNGEQSHVENSVTEEGVSGSGTSGNRRKRSLDHNSSFKPNKNAEGDPLNDSPGKSSDGAKEDEKKQKVEQNSSADLHGKQPVKQGKENSQSGEAPNDNFIHVRARRGQATNSHSLAERVRREKISERMMLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDIERIMSKDILRSRIGHGIGGYGPGLSSFHPFPNATFQGTMSSMPSTSTQFPPLPATVLDHEFQSFYGMRYDSSTVLGNLEPNGNWQNLILTTYTLVIEGE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0614 430 MobiDBLite consensus disorder prediction 224 247 - -
Lal25g0614 430 CDD bHLH_AtBPE_like 249 334 - -
Lal25g0614 430 Gene3D - 256 330 IPR036638 GO:0046983
Lal25g0614 430 MobiDBLite consensus disorder prediction 154 176 - -
Lal25g0614 430 SMART finulus 265 315 IPR011598 GO:0046983
Lal25g0614 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 414 IPR024097 GO:0006355
Lal25g0614 430 Pfam Helix-loop-helix DNA-binding domain 262 310 IPR011598 GO:0046983
Lal25g0614 430 MobiDBLite consensus disorder prediction 154 247 - -
Lal25g0614 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Lal25g0614 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 327 IPR036638 GO:0046983
Lal25g0614 430 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 8 414 - -
Lal25g0614 430 MobiDBLite consensus disorder prediction 206 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0614 Lal-Chr25 4653835 4657318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0614 1 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.714 3.61e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal25g0614 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0614 - - gmx:100794464 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0614 25 4653835 4657318 Lal25g0614 25 4653835 4657318 ECH
Lal8g0695 8 4924096 4928142 Lal25g0614 25 4653835 4657318 LSH
Lal25g0614 25 4653835 4657318 Lal10g0759 10 15276079 15280704 LSH