Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0522 ATGGATCAAAAAGCGTGCGTGGAATCTGTGAAAAATGAATTGGATTTAAAGTGTGAGAAGATTGTAGAAGGAGTTGATAAAGTAATTGCATGCCCCACTCCACAGAAGACTAGTGAACCCTTACCCACCAAATCCAAGGAGGGACAAACCCAGCTTCCAGAAAAATATGAGATCATTGCGGATTTGTTTAGTCATGTGACCTGTTCACTTAGATTGTTGCATCTTCGCAAAAAGTCTCCAACATTTCAAAATGTTTGTGCCCAGGTTGAAATTCTGGCCAAGAGAAAATTCTTGGATGCCCATCTTGCGCAGATGAAGTATATATTTCCTGAAGGCATACTCATAGAGAAGGTGCTTGTTTATGATAGTAAGAGCTTGTCTATGAAACCAGATATGAATATCACATTGGTATTTGAGGTTGTGGATGAAAACTATAAAGATTCTGCTGATATGGCTCTTCGACGCTATTTTAGCTCTAAGTTGATTGATTTCTTCAATATGCATCCTGAGGCTACTGATATTCCGGAGGCCATGCTTCCAGAGCCCTTTAGCAAAAGAACATGTGGCTTGATTAGTGTGGATTTGCCTGTGAATCCATCAACAACACTTTCATCAACTTCCAGTGAAATTGAACCATTTCCAGGGAAATCCCATTTGTGTCCATCTTTTGGCAGACACTTTTCTCAAAAGATGGATTTGTCATGTTTTCCATTATCCGAAACTCCTCTGCCATCCAATGTGTCTGCTTGCCTGGATAACCAAGAAAATGAAAGCAATTGTAAGAAAGAATCCGTAGCATCATCTCATCGTTTGAGTAATCCGAATAACGAAGGAGAGCAGCAGAAGGAGTCATTCTCTATTCGTTTTCAACCTAGTGTTATTAATACACCGGTGCATATGATCTGCCCTCCAGATTCTACTAGTGGCAGTAGTTCTGAAAGCCCTGAGACCAAAGTTGTCCTTTGCACTGATAGTTTAATGACAGAGACACCTGTGCAGTCAGCACCTCAGAGATTGATGCCGACTTCTGATGTTAAGCTTCCGAACACTACTTCCCAGAATTCAATATCATGTTATAAGCCTGCAAAAAGAGTGCTTGATTTCTCACTCATGGAAGGCAATGATGATTTGGACATTAGAGCAGACAAGATAGAATCTAGCATCCCTGGACCTAGTAGAGGATGTTCTGAGGATTTCAAATTTTCTGGTTCTGATTCCCTGCCTCGGGTGGAAGAGAGCCTTGGTTGCTTTTCTGAAAAAACCAACCAAATTGAAGCTGCTGGGTTAGATACATGTCATGAAGCATCTTCGTCAATGCTGGATATGGTTAATGTGATTCACTCTATATTTTATTCTCTCAAAAGAACTCCAATCACAAAAGAGGAGCTCTTGCAGAAGATAATTATGAATTGCTTCGATTTTGTTGAGATCAGAGAAGTTGAAGAACAGTTAGAGATCCTGGAAAAGTTGGTGCCAGACTGGATCTGCAAGAAGTTGGTTCCTTCTGGAGATATTATGTATCGTATCAAGGAAGTATCGGATTTGGACTCAGTTCGAGCAAGGGTTTCAGAAATGTGA 1578 0.4056 MDQKACVESVKNELDLKCEKIVEGVDKVIACPTPQKTSEPLPTKSKEGQTQLPEKYEIIADLFSHVTCSLRLLHLRKKSPTFQNVCAQVEILAKRKFLDAHLAQMKYIFPEGILIEKVLVYDSKSLSMKPDMNITLVFEVVDENYKDSADMALRRYFSSKLIDFFNMHPEATDIPEAMLPEPFSKRTCGLISVDLPVNPSTTLSSTSSEIEPFPGKSHLCPSFGRHFSQKMDLSCFPLSETPLPSNVSACLDNQENESNCKKESVASSHRLSNPNNEGEQQKESFSIRFQPSVINTPVHMICPPDSTSGSSSESPETKVVLCTDSLMTETPVQSAPQRLMPTSDVKLPNTTSQNSISCYKPAKRVLDFSLMEGNDDLDIRADKIESSIPGPSRGCSEDFKFSGSDSLPRVEESLGCFSEKTNQIEAAGLDTCHEASSSMLDMVNVIHSIFYSLKRTPITKEELLQKIIMNCFDFVEIREVEEQLEILEKLVPDWICKKLVPSGDIMYRIKEVSDLDSVRARVSEM 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0522 525 PANTHER EXPRESSED PROTEIN 5 524 - -
Lal25g0522 525 Pfam DNA replication factor CDT1 like 52 139 IPR014939 -
Lal25g0522 525 CDD Cdt1_m 34 187 IPR014939 -
Lal25g0522 525 SMART CDT1_2 52 181 IPR014939 -
Lal25g0522 525 Gene3D - 433 525 IPR038090 -
Lal25g0522 525 SUPERFAMILY "Winged helix" DNA-binding domain 48 183 IPR036390 -
Lal25g0522 525 MobiDBLite consensus disorder prediction 261 284 - -
Lal25g0522 525 Pfam DNA replication factor Cdt1 C-terminal domain 435 495 IPR032054 -
Lal25g0522 525 MobiDBLite consensus disorder prediction 265 284 - -
Lal25g0522 525 PANTHER DNA REPLICATION FACTOR CDT1 5 524 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0522 Lal-Chr25 3732767 3737265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0522 51 524 Core DNA Replication Machinery Family AT2G31270 28.046 3.93e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0522 K10727 - gmx:102670055 556.599