Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0514 ATGATTGGAAAATCCCCCATCTCTAAGGAGCTCAATACCAAACACAACAAGATCTTAGAGGGACTGCTTAAGCTGCCCTACAATAGGGAATGTGCAGACTGTCTGAACAAGGCACCACGATGGGCGAGTGTGAACCTTGGAATTTTCATTTGCATGCAATGTTCAGGAATTCACAGAAGTCTTGGAGTGCATATATCAAAGGTTCGGTCCACAACATTGGACACATGGTTGCCAGATCAAGTTTCCTTCATGCAATTTATGGGTAATGTAAAGGCAAATCAGCTCTGGGAGGCAGAACTGCCACCAAATTTTGACAGAAATGGATACGGAATCGAGAAGTTTATTCGTAACAAGTATGTGGATAAAAGATGGGCTTCAAAAGTTGGATTTCATGCATCTACAAAGTCAGTTGACACTTCACCAGTTGGTGGAGACATGAGTAATATTCAAAGAAATAGAAGATTGTCTCTGGAGGAAAGCATTCTCGTGAGCCACATGGCACAATATCCACCTCCGGGCTCCTTAGACTTTCAAACAAAGATTTCAGTTTCACCACCATTAAGGAGGCCATCCACATCGCTTGATTTTGATAACTCGGTTCAAAAGAGCAATGGTACTGTTGATCCTTTTGGCGTGCTTAATGATAAAAATGATTCCTCTGTACCTCCATCAAACTGGACAACATTTGATTGTAAGATGACAATGCTTACATCATACATCTTCTGTTATCTTTCTTCTATATTAGCTTACTCACTTGGACAAGGCGTATGCGCTATAATTTCGTAA 786 0.4097 MIGKSPISKELNTKHNKILEGLLKLPYNRECADCLNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKANQLWEAELPPNFDRNGYGIEKFIRNKYVDKRWASKVGFHASTKSVDTSPVGGDMSNIQRNRRLSLEESILVSHMAQYPPPGSLDFQTKISVSPPLRRPSTSLDFDNSVQKSNGTVDPFGVLNDKNDSSVPPSNWTTFDCKMTMLTSYIFCYLSSILAYSLGQGVCAIIS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0514 261 Gene3D Arf GTPase activating protein 4 130 IPR038508 -
Lal25g0514 261 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lal25g0514 261 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lal25g0514 261 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lal25g0514 261 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Lal25g0514 261 CDD ArfGap 19 119 - -
Lal25g0514 261 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 236 IPR044520 GO:0005096
Lal25g0514 261 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Lal25g0514 261 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Lal25g0514 261 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 236 - -
Lal25g0514 261 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0514 Lal-Chr25 3666629 3672306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0514 19 119 C2H2 Transcription Factor Family AT4G05330 49.533 4.03e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0514 K12486 - gmx:100802691 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0514 25 3666629 3672306 Lal25g0514 25 3666629 3672306 ECH
Lal25g0514 25 3666629 3672306 Lal10g0915 10 16560040 16561765 LSH
Lal15g0877 15 6605197 6610339 Lal25g0514 25 3666629 3672306 PCT
Lal25g0514 25 3666629 3672306 Lal15g0877 15 6605197 6610339 PCT