Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0509 ATGGTGAGGAAGAGGAGAACTGAAGGACCCAGTGGGGTTGAAAGCTCTGAACACACTGCTGAAAGGAATGCCCCACCCCCTCAACAGTATGCCCCTCCAGCTGGAATGGCAGGAGCACCTCAGGGTGGACGTGGAGGTTATGCAGTTCAAGGAGGACGTGGTGGTGGTGGGCGTGGTCGTGGTATGCCGCAACAACAATATGGTGGTCCCCCTGACTATCAACAAGGTCGAGGAAGGGGAGCGCCACCTCAGCAAGGAGGCCGTGGTGGACGATATGGTGGTGGCGAGTATGGTGGCAGTGGTGGACGTGGTGGCAGTAGCGGTGGACGTGGTGGTGGTGAGTATGTTGGTGGAGTTGGCCGTGGTGGTGGTGAGTATGTTGGTGGAGGCGGGCGTGGTGGTGGTGAGTATGTTGGTGTAGGCGGCCGTGGTGGTGGTGAGTATGTAGGTGGAGGCGGCCGTGGTGGTGGCCGTGGTGGTGGTATGGGCAGTGGCCGAGGCGTAGGACCTGGATCTTCATATGGTGCCTCTTCCAGGCCACCTTACCCCGAGCTGCACCAAGCAACCCCAGTTCCATACCAAGCTGGGGCTACTCCTCAGCCTACACCAGTTGAGGCTGCATCTTCTTCGAAGGCACCTGAGCCGTTACCAGTGGAACATAAAATGAAACAGCTGTCTATTCAATCAGAAATGGAGCAGCTGCCCATTCAATCAAACACGGAACAGCTGCCTATTCAATCAAACACGGAGCAGCTGTCCATTCAATCGGAAGCTGCTGATGTTCCCGATCCTGCTCCTGTTGCTCCACCTGCCAGCAAATCATCAATCCGGTTTCCTCTTCGTCCTGGAAAGGGTACATTTGGCCATAAATGTATTGTCAAGGCCAATCACTTCTTTGCCGAGCTACCTAATAAAGATTTGCATCAATATGATGTCACAATTACCCCAGAAGTGACTTCAAGAGGAGTGAACCGAGCTGTGATGGAACAACTTGTGAAGCTTTATCGTAATTCTCATCTTGGAAAAAGGCTCCCTGCTTATGACGGCCGCAAGAGCCTGTATACTGCTGGACCGCTTCCTTTTGTTTCAAAGGAGTTTCGTGTCTCTCTTATTGATGAAGATGATGGAACAGGAGCACAGAGGAGAGAAAGGGAGTTCAAGGTTGTGATAAAAATGGCTTCAAGGGCAGACCTTCATCATTTAGGACTCTTCCTTCAGGGGAGGCAAACTGATGCCCCTCAGGAAGCTCTGCAAGTTCTTGACATTGTCCTGCGTGAACTCCCTACTACCAGGTACTGCCCTGTAGGAAGATCATTTTATTCCCCTGATCTTGGTAGAAGGCAGCCATTAGGTGAGGGTCTGGAAAGTTGGCGTGGTTTTTATCAAAGTATCCGCCCCACTCAGATGGGACTGTCTCTGAACATTGATATGTCCTCCACTGCATTTATTGAGCCATTGCCAGTAGTCGACTTCGTCACTGAACTGCTGAACAGGGATGTCTGTCAGCGACCACTGTCTGATTCTGATCGTGTGAAGATAAAAAAAGCACTCCGAGGTATAAAAGTTGAAGTAACACATCGTGGAAACATGAGAAGAAAATATCGTATCTCTGGTCTTACCTCACAAGCTACAAGAGAGCTGACATTCCCTGTGGATGAGAGGGGAACGATGAAATCTGTTGTGGAGTATTTCTTTGAGACTTACGGTTTTATTATAAAAAATACCCAGTGGCCTTGTTTGCAAGTAGGCAATACACAGAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATTGTAGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAACGTGATATTATGCAGACTGTACGTCACAATGCCTACCATGAGGATCCATATGCCAAAGAGTTTGGAATTAAAATTAGCGACAAACTTGCCCAAGTTGAAGCTCGCATCCTCCCTCCACCTCGGCTCAAATATCATGACACAGGTAGAGAAAAGGACTGCTTGCCTCAGGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAACGGGGGAACAGTCAATCACTGGTTCTGCATAAACTTTGCAAGGAACATTCAAGATAGTGTTGCACGGAGTTTTTGTTTTGAACTTGCCCATATGTGTCAAATATCTGGCATGTCATTCAATCCAGAGCCAGTTGTTCCTGTACTCAGTGCTCGCCCTGACCAAGTTGAAAAAGTTCTTAAAAATAGGCATTCTGATGCTAAGAGAAGACTGCAGGGACAGGATCTTGATCTGCTCGTTGTTATTTTGCCAGATAATAATGGCTCTCTTTATGGTGACCTCAAACGTATATGTGAGACAGATCTTGGGGTTGTTTCTCAATGTTGTCTAACAAAGCATGTATTTAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAGGTTGGAGGAAGGAATACTGTGCTTGTTGATGCCCTTTCACGACGCATTCCCTTGGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTGACTCATCCACACCCTGGAGAGGATTCTAGCCCTTCCATTGCAGCTGTCGTGGCTTCTCAAGATTGGCCTGAAATTACTCAGTATGCTGGTCTGGTTTGTGCCCAAGCACACAGACAAGAACTCATTCAGGATCTCTTTAAGCAGTGGCAGGATCCTGTCAGAGGGACTATGACTGGTGGAATGATTAAGGAACTTCTCATATCTTTCCGGAGGGCTACAGGGCAGAAGCCAACTCGGATCATATTTTACAGGGATGGTGTTAGTGAGGGTCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATTCGGAAGGCTTGTGCATCTCTTGAGGCTAACTATCAGCCACCTGTGACATTTGTGGTCGTTCAGAAGCGCCACCATACGAGGCTCTTTGCAAGCAACCATAATGACAGGGGTTCTGTGGATAGGAGTGGGAATATATTACCTGGAACTGTGGTAGACTCCAAAATCTGTCATCCCACAGAATTTGACTTCTATCTTTGCAGTCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCATTACCATGTTCTGTGGGACGAGAACAATTTTTCTGCTGATGGTTTACAGACTCTAACCAACAATCTGTGCTACACTTATGCAAGGTGTACACGCTCTGTTTCAATTGTGCCTCCTGCCTATTATGCTCATCTTGCTGCATTTCGAGCTCGGTTCTACATGGAACCTGAGACTTCTGACAGTGGGTCAATGGCAAGTGGTGCATATGCTGCTGGTCGTGCAACGGGTGGCAATGCGACCCGTAGCACTCGGGCACCTGGTGTCAATGCTGCTGTGAGGCCTCTTCCTGCATTGAGGGATAACGTGAAGAAGGTCATGTTTTACTGCTAA 3450 0.4783 MVRKRRTEGPSGVESSEHTAERNAPPPQQYAPPAGMAGAPQGGRGGYAVQGGRGGGGRGRGMPQQQYGGPPDYQQGRGRGAPPQQGGRGGRYGGGEYGGSGGRGGSSGGRGGGEYVGGVGRGGGEYVGGGGRGGGEYVGVGGRGGGEYVGGGGRGGGRGGGMGSGRGVGPGSSYGASSRPPYPELHQATPVPYQAGATPQPTPVEAASSSKAPEPLPVEHKMKQLSIQSEMEQLPIQSNTEQLPIQSNTEQLSIQSEAADVPDPAPVAPPASKSSIRFPLRPGKGTFGHKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRNSHLGKRLPAYDGRKSLYTAGPLPFVSKEFRVSLIDEDDGTGAQRREREFKVVIKMASRADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVVDFVTELLNRDVCQRPLSDSDRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFFETYGFIIKNTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVRHNAYHEDPYAKEFGIKISDKLAQVEARILPPPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFARNIQDSVARSFCFELAHMCQISGMSFNPEPVVPVLSARPDQVEKVLKNRHSDAKRRLQGQDLDLLVVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITQYAGLVCAQAHRQELIQDLFKQWQDPVRGTMTGGMIKELLISFRRATGQKPTRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEANYQPPVTFVVVQKRHHTRLFASNHNDRGSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAYAAGRATGGNATRSTRAPGVNAAVRPLPALRDNVKKVMFYC 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0509 1149 Pfam Argonaute linker 1 domain 434 484 IPR014811 -
Lal25g0509 1149 CDD PAZ_argonaute_like 485 599 - -
Lal25g0509 1149 Pfam PAZ domain 510 615 IPR003100 GO:0005515
Lal25g0509 1149 Gene3D - 843 1149 IPR036397 GO:0003676
Lal25g0509 1149 Pfam N-terminal domain of argonaute 290 424 IPR032474 -
Lal25g0509 1149 ProSiteProfiles Piwi domain profile. 774 1095 IPR003165 GO:0003676
Lal25g0509 1149 PANTHER PROTEIN ARGONAUTE 1A 145 1148 - -
Lal25g0509 1149 Pfam Piwi domain 775 1094 IPR003165 GO:0003676
Lal25g0509 1149 Pfam Mid domain of argonaute 683 758 IPR032473 -
Lal25g0509 1149 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 1148 - -
Lal25g0509 1149 SUPERFAMILY Ribonuclease H-like 763 1095 IPR012337 -
Lal25g0509 1149 Pfam Glycine-rich region of argonaut 147 230 IPR024357 -
Lal25g0509 1149 CDD Piwi_ago-like 644 1094 IPR045246 -
Lal25g0509 1149 MobiDBLite consensus disorder prediction 1 218 - -
Lal25g0509 1149 MobiDBLite consensus disorder prediction 260 279 - -
Lal25g0509 1149 Gene3D paz domain 479 604 - -
Lal25g0509 1149 SUPERFAMILY PAZ domain 292 633 IPR036085 GO:0005515
Lal25g0509 1149 Gene3D - 664 837 - -
Lal25g0509 1149 ProSiteProfiles PAZ domain profile. 486 600 IPR003100 GO:0005515
Lal25g0509 1149 SMART PAZ_2_a_3 490 622 IPR003100 GO:0005515
Lal25g0509 1149 Pfam Argonaute linker 2 domain 626 672 IPR032472 -
Lal25g0509 1149 SMART DUF1785_2 433 485 IPR014811 -
Lal25g0509 1149 SMART Piwi_a_2 774 1095 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0509 Lal-Chr25 3606750 3614737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0509 179 1149 Eukaryotic Initiation Factors Gene Family AT1G48410 78.439 0.0 1584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0509 K11593 - gmx:100780375 1683.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0509 25 3606750 3614737 Lal25g0509 25 3606750 3614737 ECH
Lal8g0497 8 3394557 3402345 Lal25g0509 25 3606750 3614737 LSH
Lal25g0509 25 3606750 3614737 Lal10g0923 10 16606714 16613879 LSH