Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0507 ATGATCTTCCCTTCTCTGCTCACACATTTCTTCTATTATACTCTTTTCCTTTTTATCTTCGAATTCCCCATCTGGGTTTCGTTTATTTTCTCGGAAAATCTTAATTTTCCTTCAAAGTTTACATTTTTACTTGAAAATCCAAAATATCAAAATCCAAGACTGGTGTTGGAGTTGGTCCCTGTGAAGCTTAGGGTGTTACAAGGACTAGCTCTGATTTTGCTACAATGGAGATGCAGGCCACAAAGTTTTTCTACAGAACTAAAAAAGGAAGAAGACCAAATCGAAGGCTCGAGGTCAAACAACTCTTGCTCGGGTAGTAGCAGCCATTCCAATGGTGGAACACAATCTGAGAATGTCGCCCAATCATGGGATGTAACTTCTTCTGGAAACAATCACACTCCCAAGGTGAGGAAACCATATACCATTTCCAAGCAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCGTTGAAGTTGTATGGTCGTGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGATTGTTCGGGAGTCTGATGTCAATGCTGAAACTTCAATACATCCAATTGACATACCTCCTCCTCGTCCAAAGAGGAAACCCCTTCATCCATATCCACGGAAATCAGTCGACTCTTCGAAAGAACACTTCATACCGAGTGTATCAGGAATATCTCCACCTTCAAACCTGTTAACTGCAGAGAAAGTCACTCAATCCCCGACCTCTGTTCTACCCGCCTTTGGTTCGGATGCATTTGGGCAGATCAACAGATGTGTTTCGCCAAATTCTTGCACCACTGATATTCACTCACTCAGCTTGTCACCTGTTGAAAAGGAAAATGAGTGCATGATATCCAATTCATCTGAGGATGAAGAGAAAGGGTCTCTAGCTTCAGTTCCTCTATCCACCAGTTCAAAGCTACTCTTGTCCGTGAAATCTGAGTTGAGTTCCAAGGAAACTGAATGTTTCAAAGAAGAAGTTGCCGAAACGCCTCGCATCACTTATATCAAACTTTTTGGAAGATCTGTCTCTATGGTAAGCAATCAGAAGTCAATGAATGTAGATGAGGAGGAAAATAATAAGCCAATTACTAATAATTCCAATGAAGTGGGTAATGTTGAGTATCAAAATCTTGGCCAAGCATGTTCATGTGAGCAAGTAGATATTAATTTATCACTGGGATTGTGTAATAGTAATTGTCATACAAATCCTAATGGAGTTAAAGTAGCATGCTTAGAAGCTCAAAAGGAGGACTTTTGCTCTGGTGAATCTGCATGTGATGATTCTGTGCCAATGTGGAATTTGTATCAAGGTCCTCCACCTTTTTACCTTAGGCCATGTACACAAATCCTGAATTTGGCCCCTCTTTGTCCTTCTTTGAAAGTGAAAACAGGAGAGGAGGGAAGTTCTTGCACTGGTTCTAATGCAGAATCAGTTAGTGGTATGGAGAATCAATGCAAGATTTTGGATGCTGTTGATTCTCAATATCAAAAATCTCATCATGTAGAAGGAAAAGTATCCCAAAGGGGATTTGTACCATATAAGAGATGCTTAGCTGAAAGAGATGCAAATTCTTTAATTGCCTCTTTGGAAGAGAGGGAAGGACGACGAGCTCGTGTGTGTTCATAG 1686 0.4081 MIFPSLLTHFFYYTLFLFIFEFPIWVSFIFSENLNFPSKFTFLLENPKYQNPRLVLELVPVKLRVLQGLALILLQWRCRPQSFSTELKKEEDQIEGSRSNNSCSGSSSHSNGGTQSENVAQSWDVTSSGNNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKIVRESDVNAETSIHPIDIPPPRPKRKPLHPYPRKSVDSSKEHFIPSVSGISPPSNLLTAEKVTQSPTSVLPAFGSDAFGQINRCVSPNSCTTDIHSLSLSPVEKENECMISNSSEDEEKGSLASVPLSTSSKLLLSVKSELSSKETECFKEEVAETPRITYIKLFGRSVSMVSNQKSMNVDEEENNKPITNNSNEVGNVEYQNLGQACSCEQVDINLSLGLCNSNCHTNPNGVKVACLEAQKEDFCSGESACDDSVPMWNLYQGPPPFYLRPCTQILNLAPLCPSLKVKTGEEGSSCTGSNAESVSGMENQCKILDAVDSQYQKSHHVEGKVSQRGFVPYKRCLAERDANSLIASLEEREGRRARVCS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0507 561 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Lal25g0507 561 SUPERFAMILY Homeodomain-like 140 194 IPR009057 -
Lal25g0507 561 MobiDBLite consensus disorder prediction 97 138 - -
Lal25g0507 561 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 193 IPR006447 GO:0003677
Lal25g0507 561 MobiDBLite consensus disorder prediction 88 148 - -
Lal25g0507 561 SMART sant 145 193 IPR001005 -
Lal25g0507 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 195 IPR017930 -
Lal25g0507 561 PANTHER SWI/SNF COMPLEX-RELATED 91 549 - -
Lal25g0507 561 ProSiteProfiles SANT domain profile. 144 195 IPR017884 -
Lal25g0507 561 Pfam Myb-like DNA-binding domain 146 189 IPR001005 -
Lal25g0507 561 Gene3D - 148 195 - -
Lal25g0507 561 CDD SANT 148 191 IPR001005 -
Lal25g0507 561 MobiDBLite consensus disorder prediction 212 233 - -
Lal25g0507 561 PANTHER PROTEIN REVEILLE 7-RELATED 91 549 - -
Lal25g0507 561 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0507 Lal-Chr25 3584318 3588007 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal25g0507 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0507 - - lang:109338572 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0494 8 3375735 3378034 Lal25g0507 25 3584318 3588007 LSH
Lal25g0507 25 3584318 3588007 Lal10g0927 10 16652453 16657319 LSH