Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0506 ATGGAATACGGTGTTGGAGACGGTGGTGGGTCCCCCGGGGACCACCACCATATTGGTGGTTCTTCTGATTCTCAGAGGAGGAAGAAGAAGCGTTACCACCGTCACACTGCTAACCAGATTCAAAGGCTGGAATCCATGTTTAAGGAGTGTCCACACCCTGATGAAAAACAAAGGATGCAGCTAAGCAGAGAGTTAAGTTTGGCCCCTAGGCAAATCAAATTTTGGTTCCAGAACAGAAGGACTCAGATAAAGGCACAGCATGAAAGAGCTGATAACTGCACCCTCAGATCAGAAAATGATAGGATACGTTGTGAGAACATTGCATATAAGGAAGCCTTAAAAAACATGTTTTGTCCCTCCTGTGGTGGCCCTCCACTTCATGAAGATCCTTATGTTGATGAACAAAAGTTGAGAATGGAGAATGCACAACTCAAAGAAGAGCTTGAAAGAGTATCAAACATTGCAGCTAAGTACATTGGAAGACCAATTTCTCAGCTTCCATCAATTCAGCCTATTCATATGTCTTCTTTGGATTTATCAATGGGAAGTTTTGGGACACAAGGGTTAAGTGTAGGACCTACCCTTGATCTTGATCTTCTACCAGGGAATGGTACTTCATCATCAATGCAAAATGTGCCTTACCAACCTTCTTTATCAGACATGGATAACTCTCTTATGTCTGACATAGCTTCAAATGCTATGGAAGAGTTGATAAGTCTTTTGCAGACAAATGAGCCACTATGGATGAAATCAAGTACTGATGGCAGAGCTGTCCTTAATATTGATACCTATCAAAGAATGTTCCCTAAGCCAAATAGTCACTCGAAGAATCCGAATGTTCGGATTGAAGCTTCTAGAGATTCAGGAGTTGTAAATATGAATGGGTTAACTTTGGTTGACATGCTCATGGATCCTAACAAGTGGATGGAGCTATTTCCCACTATTGTCACAATGGCAAGAACTATTGAAGTTCTATCTTCTGGCATTATGGGTGGTCATAGTGGTACTTTGCAATTGATGTATGAAGAGATGCAAGTGCTATCTCCACTTGTTTCAACTAGAGAGTTCTACTTCGTGCGGTACTGTCAGCAAATTGAGCAAGGCTTGTGGGCAATAGTTGATGTTTCTTATGATTTTCCTCAAGATAACCAATTTGTTCCTCAATTTCGATCTCATCGTCTTCCTTCCGGTTGCTTCATACAGGACATGCCTAATGGTTATTCCCGGGTAACTTGGGTTGAGCATGTAGAGATTGAAGATAAAACTCCAGTTCATCGGCTTTACAGGAATCTTCTCTATAGTGGATTGGCATTTGGAGCACATAGATGGCTTAGTAACCTTCAGAGGGTGTGTGAAAGAATTGCTTGTCTAATGGTATCAGGAAATTCTACAAGGGATCTCGGATCGGTGATTCCATCAGCTGAGGGAAAAAGGAGCATGATGAAACTTGCACATAGGATGATCACCAATTTCTGTGCAAGCATTAGCACATCTTCTAGCCACCGATGGACAACACTCTCCGGGTCGAATGAAATTGGAGTCAGAGTCACAGTCCATAATAGCTCAGACCCTGGCCAACCAAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCAATCCCTCCACAAATTGTGTTCAATTTCTTCAAGGATGAAAGAAAAAGACCCCAGTGGGATGTTCTTTCCAATGGTAATGCTGTGCAAGAGGTTGCCCATATAGCAAATGGTTCACATCCTGGTAACTGCATATCTGTGCTTAGAGCTTTCAACACTAGTCAGAACAGCATGTTGATACTCCAAGAAAGCTGCATAGACTCTTCAGGATCCATTGTAGTTTATTGTCCAGTTGAATTAGCAGCAATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCCTTGTTACCATCAGGATTCACCATTTCACCTGATGGAAAAACTGATCAAGGACTTGGTGATAGAGCATCAACAAGCACAAGCACAAACACAAACACAAACAAAAACACTTCAAGAGGGTCACTTGTAACAGTTGCATTTCAGATTCTAGTGAGTAGTTTACCATCTTCCAAGCTGAACAAGGAGTCAGTTAATACTGTTAATAACCTCATTGGAACCACTGTTCAGCAAATAAAGGCTGCATTGAATTGTCCTACTTCTTCATGA 2172 0.4194 MEYGVGDGGGSPGDHHHIGGSSDSQRRKKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELSLAPRQIKFWFQNRRTQIKAQHERADNCTLRSENDRIRCENIAYKEALKNMFCPSCGGPPLHEDPYVDEQKLRMENAQLKEELERVSNIAAKYIGRPISQLPSIQPIHMSSLDLSMGSFGTQGLSVGPTLDLDLLPGNGTSSSMQNVPYQPSLSDMDNSLMSDIASNAMEELISLLQTNEPLWMKSSTDGRAVLNIDTYQRMFPKPNSHSKNPNVRIEASRDSGVVNMNGLTLVDMLMDPNKWMELFPTIVTMARTIEVLSSGIMGGHSGTLQLMYEEMQVLSPLVSTREFYFVRYCQQIEQGLWAIVDVSYDFPQDNQFVPQFRSHRLPSGCFIQDMPNGYSRVTWVEHVEIEDKTPVHRLYRNLLYSGLAFGAHRWLSNLQRVCERIACLMVSGNSTRDLGSVIPSAEGKRSMMKLAHRMITNFCASISTSSSHRWTTLSGSNEIGVRVTVHNSSDPGQPNGVVLSAATTIWLPIPPQIVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNSMLILQESCIDSSGSIVVYCPVELAAINIAMSGEDPSYIPLLPSGFTISPDGKTDQGLGDRASTSTSTNTNTNKNTSRGSLVTVAFQILVSSLPSSKLNKESVNTVNNLIGTTVQQIKAALNCPTSS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0506 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 720 IPR042160 -
Lal25g0506 723 SUPERFAMILY Bet v1-like 475 714 - -
Lal25g0506 723 SMART START_1 228 453 IPR002913 GO:0008289
Lal25g0506 723 MobiDBLite consensus disorder prediction 654 672 - -
Lal25g0506 723 Gene3D - 16 100 - -
Lal25g0506 723 Coils Coil 134 161 - -
Lal25g0506 723 Pfam START domain 229 453 IPR002913 GO:0008289
Lal25g0506 723 SUPERFAMILY Bet v1-like 220 454 - -
Lal25g0506 723 Gene3D - 226 453 IPR023393 -
Lal25g0506 723 SUPERFAMILY Homeodomain-like 10 86 IPR009057 -
Lal25g0506 723 MobiDBLite consensus disorder prediction 1 36 - -
Lal25g0506 723 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Lal25g0506 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 7 720 - -
Lal25g0506 723 MobiDBLite consensus disorder prediction 22 36 - -
Lal25g0506 723 CDD START_ArGLABRA2_like 224 452 - -
Lal25g0506 723 Pfam Homeodomain 29 84 IPR001356 GO:0003677
Lal25g0506 723 ProSiteProfiles START domain profile. 219 456 IPR002913 GO:0008289
Lal25g0506 723 MobiDBLite consensus disorder prediction 646 672 - -
Lal25g0506 723 SMART HOX_1 27 90 IPR001356 GO:0003677
Lal25g0506 723 CDD homeodomain 29 87 IPR001356 GO:0003677
Lal25g0506 723 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0506 Lal-Chr25 3574847 3578252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0506 27 723 Homeobox Transcription Factor Family AT1G73360 64.723 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal25g0506 START 3e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0506 K09338 - gmx:100809075 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0506 25 3574847 3578252 Lal25g0506 25 3574847 3578252 ECH
Lal8g0493 8 3370101 3373345 Lal25g0506 25 3574847 3578252 LSH
Lal25g0506 25 3574847 3578252 Lal10g0928 10 16672584 16676709 LSH
Lal16g0913 16 6015043 6018917 Lal25g0506 25 3574847 3578252 PCT
Lal15g0896 15 6745523 6749358 Lal25g0506 25 3574847 3578252 PCT
Lal23g0716 23 9803184 9807772 Lal25g0506 25 3574847 3578252 PCT
Lal25g0506 25 3574847 3578252 Lal16g0913 16 6015043 6018917 PCT
Lal25g0506 25 3574847 3578252 Lal15g0896 15 6745523 6749358 PCT
Lal25g0506 25 3574847 3578252 Lal23g0716 23 9803184 9807772 PCT