Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0502 ATGTTACCTATTTTTATGGAATCTCAAGGAAACATGGCTACTGTTGTGAATGATGAGGAGCCAATGCTGAAAGAAGCAAATGGACAATCATCTGATGAACCAGAGAATTCTAAATTCCAGAAGTTTGTATCCAGGACACAAAGTGCATCAATGTCTAATACTATGATCTCCATGGAGCAATATGACAGAAAAACTAGTCTTGTGGGACATACTGGTCCACTTCGCACTGAGAGAAAACCCCCGTTTATGCATATGAGTGGTCCAATATATCCTACCCATGGAACTGGAAATCTTTCGCACCAGAATATAGCTGCGCTAGTAAACAAAGTAGTGGATATCCAGAAAGAAAAGTTTCCTATTTTCCGTGGCAGAAGTGAAAATCATTGGAATAACAACCATGTTGGAAATAATGAACATTTACTGAGGTCCGGGCAGCTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTCAAGGCTTCTCAGCAAAGAAAACCAAAACCTTCAACTATGTTCGATCCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAAGGTTTTGCAAGAAAATTTTATTCCTTTTGCTCCTCATATGTTCCTGGAGTTATGAACCCTCATGCAAAAGTTGTACAACATTGGAGCAAGGAGGGCAAATGTATTTCTATCCACCAGACGCTGACAACAACACTTGTTGTACTCAGAAGCATCAATGATTTCGTATATTTAATAAACATTCTTCTCCAGTTTAGATTGGCTTATGTGAATCCTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTAAATTATCTGCGGGGTTATTTTCCTCTCGATCTATTTGTTGTAATCCCTCTTCCTCAGATAATGATTTTGTTTGTGCTACGAAAATACTTGCGGACATCGGGAGCAAATTATGCCAAGAATCTTTTACGGGTAGCAATCCTAGTGCAGTATATTCCCAGATTATACAGGTTTCTGCCTCTGCTAATTGGGCAGTCACAAACGGGATTTATATTTGAGTCAGCCTGGGCAAATTTTGTTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGCCTACAGCGTGTTAATCAATGTTTGCGAATTGCCTGCCATAAAGCTAATATTCATGATTGCCTGAAATATATTGATTGTGGGCATGGCCATACTTCAAACAATCAGTTGGACGTAACATCAGTTCTATGGCACAACAATGCAGACGCCATGGATTGTTTGAAGCCCCCTTCTGATGGTGGTTTTGAATATGGGATCTATGCTAATGCTGTACCACTTACTACGGAAACTAACATAATCATCAAATATGTGTATTCTCTGTTTTGGGGATTTCAGCAAATAAGTACTCTGGCTGGTAATCAAACCCCGAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATCGGATTGGGGTTATTGCTTTTTGCACTACTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGAAGGAGGCTAGAGATGCAACTTAGAGGACGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGACATGAGAAGGAGAGTGCGACAAGCTGAACGGTATACCTGGGCTGCTACAAGGGGAGTGAATGAAGAAATGCTTCTAGAGAATTTACCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAAAAAATTCGAATTTTTGCATTGATGGATGAACCTATTTTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATAAAAGGAAGCAGAGTTTTGTGTCGGGGTGGTCTGGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAACTGGAAAGCATCGGAGAAGATGGAATCGGAGTTCCCTTATCTGAATGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCGTCCGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAGGACAGAAATTGGTTAGCAATAGGACTGTAAAGTGCTTAACAAACGTCGAAGCATTTTCACTTCGAGCTGCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCGCGTGTTCAAGGAGCTCTAAGGTATGAATCACTTTATTGGAGATCACTTGCAGCAACCAGGATCCAGGTTGCATGGAGATATAGGAAGAAACGTCTATGTCGTGCTAATACCACATAA 2268 0.4101 MLPIFMESQGNMATVVNDEEPMLKEANGQSSDEPENSKFQKFVSRTQSASMSNTMISMEQYDRKTSLVGHTGPLRTERKPPFMHMSGPIYPTHGTGNLSHQNIAALVNKVVDIQKEKFPIFRGRSENHWNNNHVGNNEHLLRSGQLGMCNDPYCTTCPTYFKASQQRKPKPSTMFDPKFHNALYGDAKGFARKFYSFCSSYVPGVMNPHAKVVQHWSKEGKCISIHQTLTTTLVVLRSINDFVYLINILLQFRLAYVNPESRVVGAGDLVDHPKKIALNYLRGYFPLDLFVVIPLPQIMILFVLRKYLRTSGANYAKNLLRVAILVQYIPRLYRFLPLLIGQSQTGFIFESAWANFVINLLIFMLSGHVVGSCWYLFGLQRVNQCLRIACHKANIHDCLKYIDCGHGHTSNNQLDVTSVLWHNNADAMDCLKPPSDGGFEYGIYANAVPLTTETNIIIKYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDMRRRVRQAERYTWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKIRIFALMDEPILDAICERLRQKTYIKGSRVLCRGGLVEKMVFVVRGKLESIGEDGIGVPLSEWDACGEELLTWYLEHSSVSTDGKKVRLPGQKLVSNRTVKCLTNVEAFSLRAADLEEVTILFTRFLRSPRVQGALRYESLYWRSLAATRIQVAWRYRKKRLCRANTT 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0502 755 CDD CAP_ED 590 706 IPR000595 -
Lal25g0502 755 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 754 - -
Lal25g0502 755 Gene3D Jelly Rolls 588 712 IPR014710 -
Lal25g0502 755 SUPERFAMILY Voltage-gated potassium channels 225 518 - -
Lal25g0502 755 ProSiteProfiles cAMP/cGMP binding motif profile. 590 658 IPR000595 -
Lal25g0502 755 SUPERFAMILY cAMP-binding domain-like 518 707 IPR018490 -
Lal25g0502 755 MobiDBLite consensus disorder prediction 25 46 - -
Lal25g0502 755 Gene3D - 220 515 - -
Lal25g0502 755 Gene3D Helix hairpin bin 517 582 - -
Lal25g0502 755 Pfam Ion transport protein 228 518 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal25g0502 755 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 16 754 - -
Lal25g0502 755 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0502 Lal-Chr25 3536044 3548347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0502 17 668 Ion Channels AT3G17700 59.618 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0502 K05391 - gmx:100795427 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0502 25 3536044 3548347 Lal25g0502 25 3536044 3548347 ECH