Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0488 ATGGTGTTAGGGTGGAGGAGAAGGAAGAACAATAACAGTAAGCTAAATGTTGAGGTGGTGATTCCTAAGCACTTTATGTGTCCAATTTCATTGGATTTGATGAAAGATCCTGTGACATTGTCCACAGGGATCACATATGATAGAGAAAGTGTGGAAAAATGGTTTGATGATGGGAATTGTACATGTCCCGTTACAAACCAAATTGTGAGGAACTTTGATATGATTCCAAACCATTCTCTTAGGGTAATGATCCAAGATTGGTGTGTGGAAAATAAGCAACATGGGATAGAGAGGATTCCAACACCAAGAATACCAATTAGTCCATTTGAGGTAGCAGAGCTTCTAATCCAAGTGAAGGCCTCAGCAAGAGGTTTGGACCAATATGGTTGCCTTGAATTGGTGCAGAAAATGAAAAGGTTGGGTTTTTTGATGGAGAGGAACAAGAAATGCATAGTGGAGAATGGAGCAATTGGTGCATTGGCATCAGCATTTGATGTATTTGCTAATGATTCTGTTGAGAGAAATGTGAGTGTTCTTGAAGAGATTTTATCAGCACTGAATTGGATGTTTCCACTTCAATTTGAAGCACATAAATCTTTGGGGTCTAAAGCTTCCTTAACTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCATGCAAAGAAATGTCAATTGTTGCATTGAAAGAGCTTCTTTCATTTGGTGATGAGAAACATGTAGAAGCTTTATCAGAAATTGAAGGAGTTTATGAGTTATTGGTAGAGTTCATCAACAAGAGAATTAGTCCAACTATTACAAAGGCTTCAATGAGTGTAATTTGGTACTTAGTTTCATCCTCTTCACATTCTAGTGAAAAAATGAAGTTAGCATTTGTTGAGTTGGGTTTGGTTTCTTCACTTTTGGATATTTTCATTGACTCAGAAAAGAGCCTATGTGAAAAATCTTCAGCCATTTTTAACTCCTTATGCAGTATCTCACAAGGAAGGGAAAAAGCTTATGGTAATGATTTAACAGTTCCTTTGTTGGTTAAGAAAATATTGAGAGTTTCAGCAATTACTACAGATCACTCAGTTTCTTGTATATGGAAGATGTGCAAATTTGGAGAAAAAGATGATGAAAGAAGAGTTCTTGTTGAAGCACTTCAAGTTGGTGCATTTCAGAAACTATTGTTGGTATTGCAAGTTGGATGTAGTGATGAGATCAAAGAAAAAGCCACTGAACTTCTCAAGTTGATGAATCCTTACAGGGTTGACTTGGAATGCATAGACTCAGATTATAGGAATGTCAAAAGATCATTTTAA 1302 0.3671 MVLGWRRRKNNNSKLNVEVVIPKHFMCPISLDLMKDPVTLSTGITYDRESVEKWFDDGNCTCPVTNQIVRNFDMIPNHSLRVMIQDWCVENKQHGIERIPTPRIPISPFEVAELLIQVKASARGLDQYGCLELVQKMKRLGFLMERNKKCIVENGAIGALASAFDVFANDSVERNVSVLEEILSALNWMFPLQFEAHKSLGSKASLTCMVWFLKHQDLSCKEMSIVALKELLSFGDEKHVEALSEIEGVYELLVEFINKRISPTITKASMSVIWYLVSSSSHSSEKMKLAFVELGLVSSLLDIFIDSEKSLCEKSSAIFNSLCSISQGREKAYGNDLTVPLLVKKILRVSAITTDHSVSCIWKMCKFGEKDDERRVLVEALQVGAFQKLLLVLQVGCSDEIKEKATELLKLMNPYRVDLECIDSDYRNVKRSF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0488 433 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Lal25g0488 433 CDD RING-Ubox_PUB 25 67 IPR045210 -
Lal25g0488 433 SUPERFAMILY ARM repeat 141 411 IPR016024 -
Lal25g0488 433 Gene3D - 115 412 IPR011989 -
Lal25g0488 433 SUPERFAMILY RING/U-box 19 97 - -
Lal25g0488 433 PANTHER WDSAM1 PROTEIN 11 433 IPR045185 GO:0061630
Lal25g0488 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 433 - -
Lal25g0488 433 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
Lal25g0488 433 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Lal25g0488 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0488 Lal-Chr25 3407803 3409104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0488 5 433 U-box Gene Family AT5G37490 42.889 4.99e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0488 - - lang:109340061 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0482 8 3249242 3250552 Lal25g0488 25 3407803 3409104 LSH
Lal25g0488 25 3407803 3409104 Lal10g0942 10 16782537 16783850 LSH
Lal23g0709 23 9742527 9743840 Lal25g0488 25 3407803 3409104 PCT
Lal25g0488 25 3407803 3409104 Lal23g0709 23 9742527 9743840 PCT