Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0474 ATGGGTATCAAGGATCTTCTGAGATTCATGAAGCCTTACATTGAACCTATCCATATCAAGAAGTATGCTGGGAAACGCGTGGGTATTGATGCATATTCATGGCTTCACAAGGGTGCTTATTCATGTAGTATGGAGCTTTGTTTGGATTCTGATAGTGAAAGGAAATTGCGAAAAAGAAGTGCTAATCGTGAATTGGCAATGGCCAAGCTCCAAGAAGGGAATGTTAATGCAGCTTCAGAGCTATTCCAGAGAGCAGTGAATATTACACCCCTAATGGCATATCAACTGATTCAGACTCTGAGGTCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCTAATCTTGAAACACAAAAGGGTGGAATTGCAGCAGTAATAACAGAAGATAGTGATCTGATAGCATATGGTTGTCCAGCTGTTGTTTTTAAGATGGACCGTAATGGAAATGGTGAAGGAATAGAGTTAGAGAAGGTTTTTGGTGCTGAGTCTACTAAACCTTCATTTCGGAGTTTTGATATGAAACTATTCACAGGTATGTGCATCTTAGCAGGCTGTGATTTTCTTCCATCTGTTCCCGGAATTGGTATTGCTCGAGCTCATGCTTTAGTTTCCAAGTATCGGAACCTAGACCGTGTTTTGTCTGTTCTGAAGTTTGAGAAGGGTGACCAAATGCCAGAAGATTACGCCAAATCTTTCGAAGAGGCGGTTGCAGTCTTTGAGCATGCTCGAATATATGATGCCAATACTAAAGAGCTTAGGCACATGAAGCCTCTTCCACATGATTTTCTTGAGACACTTGATGGAAACCTTGATTTCTTGGGACCAGAAATTCCTCCAACTATTGCTGCTGCAATAGCTGAAGGAAACTTAAACCCATCTACCAAGGAAGCCTTCGATAAGTCGGAATGTCTTGAACTTTCTCCACAACCTGTTACTCTCCGACTAAATGGTAAACTCCGGAAAACTGAAGTTCCAGCACCGACTAGGCAAGAAAATTGTTTTGCAGTTTTTGGCTCCAATACAAGAGAAAAGATGACAAAACAGGAGCTGGTTTCAGATAAAGACAAGTACTCTGATGAAGCATTGGCACTTCAGAAACTAATCATGCCATTGAGAACAATAGAAAATACCATTTTAACTGATGACACTCCTTTGAAGTTTCCTAACAACAATCCCTTTAAATTAAGGAAAACTGAGGAAATATCTTTGGTTGAGACAGAAAACACAATGGAAAATGTTTCTTTTGTCAATAGTATAGAATATATTGACTTGTGCTTATCTCCTGATAGATTTGAAGAAGAGGGGTCTGAAATTTTTTCAAGGAAAAGGAAATTTGAAGAGATTTGCTCAGATCAACTGCAAACTAGTGATGAACAAATTTCAGGAGTTACTGAAGTGGAAAACTCAGATATTTTATGTTTGACTCAAGGAAGTGTGAGTTCTAAGACCATGAAAAGTGCCAATTTGAAAGGAAAAGATGAAAGTAAGAAAATATCCAAGAGAAGCAAGTTCAAGAAAGCAGTGAGTAGCAATGGAACTATTCTGAATTTCTTTTCAAGAGTGTAA 1593 0.3879 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRKRSANRELAMAKLQEGNVNAASELFQRAVNITPLMAYQLIQTLRSENIEFVVAPYEADAQLAYMSNLETQKGGIAAVITEDSDLIAYGCPAVVFKMDRNGNGEGIELEKVFGAESTKPSFRSFDMKLFTGMCILAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKFEKGDQMPEDYAKSFEEAVAVFEHARIYDANTKELRHMKPLPHDFLETLDGNLDFLGPEIPPTIAAAIAEGNLNPSTKEAFDKSECLELSPQPVTLRLNGKLRKTEVPAPTRQENCFAVFGSNTREKMTKQELVSDKDKYSDEALALQKLIMPLRTIENTILTDDTPLKFPNNNPFKLRKTEEISLVETENTMENVSFVNSIEYIDLCLSPDRFEEEGSEIFSRKRKFEEICSDQLQTSDEQISGVTEVENSDILCLTQGSVSSKTMKSANLKGKDESKKISKRSKFKKAVSSNGTILNFFSRV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0474 530 SMART xpgineu 101 170 IPR006086 GO:0004518
Lal25g0474 530 Gene3D - 178 251 - -
Lal25g0474 530 Gene3D - 52 172 - -
Lal25g0474 530 Gene3D - 1 51 - -
Lal25g0474 530 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Lal25g0474 530 CDD H3TH_FEN1-like 185 255 - -
Lal25g0474 530 CDD PIN_EXO1 1 168 IPR044752 GO:0046872
Lal25g0474 530 Pfam XPG I-region 104 195 IPR006086 GO:0004518
Lal25g0474 530 ProSitePatterns XPG protein signature 2. 104 118 IPR019974 GO:0016788
Lal25g0474 530 SUPERFAMILY PIN domain-like 2 195 IPR029060 -
Lal25g0474 530 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 180 309 IPR036279 -
Lal25g0474 530 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 54 525 - -
Lal25g0474 530 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 57 - -
Lal25g0474 530 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lal25g0474 530 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 100 117 IPR006084 -
Lal25g0474 530 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 185 200 IPR006084 -
Lal25g0474 530 SMART HhH_4 182 215 IPR008918 GO:0003677|GO:0003824
Lal25g0474 530 Pfam XPG N-terminal domain 1 46 IPR006085 GO:0004518
Lal25g0474 530 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 54 525 IPR006084 -
Lal25g0474 530 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 57 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0474 Lal-Chr25 3266048 3270787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0474 54 249 Core DNA Replication Machinery Family AT5G26680 27.723 3.35e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0474 K10746 - gmx:100817932 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0474 25 3266048 3270787 Lal25g0474 25 3266048 3270787 ECH