Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0470 ATGGCGGAACTTGATCTATCGAAGAAAGTAGCCGATAGGTATCTGAAGCGCGAGGTTCTTGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACTGAGACAGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAACAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTCCTTAAAGAGCTTAAATATCCATATATAATTGAGTTGATTGATGCCTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGATCTCGAAGCTGTCATACGAGATCGAAATATTTTTCTTTCGCCAGGCGATATAAAATCTTTCCTTCAAATGACGCTAAAAGGTCTTGCATTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTGATGGACAACTGAAACTTGCAGATTTTGGTTTAGCACGAATATTTGGAAGCCCAGACCGCAGGTTCACTCATCAGGTATTTGCTCGATGGTACAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTGCTTCTTCGTCGACCCTTTCTGCAGGGTTCAAGTGATATCGATCAATTAGGAAAGATTTTTGCAGCACTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAGTATGTTCCCGCCCCTCCTTTGCGCTCCTTATTTCCAGTGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACGTATGATCCAAAAGTTAGAATTTCAGCACAGCAGGCATTAGAGCACAGGTACTTTACTTCTGCACCTCTGCCCACAGATCCAGATAAGCTTCCGAGACCTGCCCCGAAGAGAGAACCTAAGGCTTCAGATTTTGATTCACATGAGGGTCCTACTGTCCTGTCACCACCAAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGGTTTGAAGGCAACTCTTTGCAAAGAGATAAGGTTGAGGACAATGTTGGTAATTCCAGACAGTCAGCTGGTGATAATACAGGCAAGAATGATCCAGCACCAATGTCACTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAGCAGCCAGAATGA 1248 0.4215 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTETGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKYPYIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSFLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSDGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAALGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPVASDDALDLLSKMFTYDPKVRISAQQALEHRYFTSAPLPTDPDKLPRPAPKREPKASDFDSHEGPTVLSPPRKSRRVMPGRDGFEGNSLQRDKVEDNVGNSRQSAGDNTGKNDPAPMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQQPE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0470 415 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Lal25g0470 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lal25g0470 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0470 415 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Lal25g0470 415 MobiDBLite consensus disorder prediction 306 321 - -
Lal25g0470 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lal25g0470 415 MobiDBLite consensus disorder prediction 295 415 - -
Lal25g0470 415 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Lal25g0470 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lal25g0470 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Lal25g0470 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0470 415 MobiDBLite consensus disorder prediction 336 359 - -
Lal25g0470 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lal25g0470 415 MobiDBLite consensus disorder prediction 398 415 - -
Lal25g0470 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0470 Lal-Chr25 3244175 3250403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0470 8 412 Core Cell Cycle Gene Families AT1G18040 76.049 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lal25g0470 Pkinase 3.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0470 K02202 - jre:109020969 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0470 25 3244175 3250403 Lal25g0470 25 3244175 3250403 ECH
Lal8g0459 8 3053725 3057864 Lal25g0470 25 3244175 3250403 LSH
Lal25g0470 25 3244175 3250403 Lal10g0961 10 16922295 16925288 LSH
Lal15g0929 15 7129172 7134846 Lal25g0470 25 3244175 3250403 PCT
Lal25g0470 25 3244175 3250403 Lal15g0929 15 7129172 7134846 PCT