Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0445 ATGCCAACTCGATCAACAGGAACCATTTCCCAAGACTGGAACCCAGTGGTTCTCCACAAATCAAAGCCCAAAGCTCATGATCTTCGAAACCCTAAGGCTGTGAACCAAGCTCTCCGAACCGGTGCGGAGGTTCAAACAGTTAAGAAATTCGATGCCGGTTCGAATAAAAAAACCGGCGGTCCGGTTATTTATGGTAGGAAGCTTGATGAAGCGGGTGAACCGGCGGCGTTTGAGAAAGTGGCGGTGGAGGTGAGGCACGCGATACAGAAGGCGCGTTTGGAAAAGAAAATGAGTCAGAGTGAGTTGGCGAAATTGATTAATGAACGGAATCAGGTTGTGCAGGAATATGAGAATGGAAAAGCTGTTCCGAATCAGGTAGTGTTGGCTAAGATGGAAAAAGTGCTTGGTGTTAAGCTTAGGGGTAAAATTGGAAAATGA 438 0.468 MPTRSTGTISQDWNPVVLHKSKPKAHDLRNPKAVNQALRTGAEVQTVKKFDAGSNKKTGGPVIYGRKLDEAGEPAAFEKVAVEVRHAIQKARLEKKMSQSELAKLINERNQVVQEYENGKAVPNQVVLAKMEKVLGVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0445 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Lal25g0445 145 CDD HTH_XRE 87 139 IPR001387 -
Lal25g0445 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
Lal25g0445 145 Coils Coil 88 115 - -
Lal25g0445 145 Gene3D - 72 145 IPR010982 GO:0003677
Lal25g0445 145 SMART mbf_short4 87 142 IPR001387 -
Lal25g0445 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Lal25g0445 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Lal25g0445 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Lal25g0445 145 SUPERFAMILY lambda repressor-like DNA-binding domains 83 139 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0445 Lal-Chr25 3063147 3063584 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lal25g0445 MBF1 9.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0445 K03627 - twl:119996545 230.72