Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0434 ATGCCATTCCCTCCATTTCCCTCTTCTCCGCCACCTTCTAACGCCACTCACCTTCATTCCTTAATCGCCTCTAATCCTACCCCGCCACCACCCGACACCCACTCACCACCCCCACCACCCGACTCCCACTCACCACCGCCTCCCGCCACCCCTTCACCACCGCCACCGGCCACTCCCACTCCCCATCATCCCTCAGTACCTTTGCCAAGAATTCATCCAAAATCACCACCGTCAGAACCGCCACCGTCGTGGAGTTCGAGCGTATCGACCGGATTGGTGTTCGGAATTCTGGGTGGGGCGGTGTTGTTGGTGTTGGTGTTGAGCAGTATTATGTGCATTTGTTGCATGAAAAAGAAGAAAAGACCCAATCAAGGGAAACCCTATCCTCCTCATCTTACTCCATCACAATCCCAACACAAAGCTGATGCATATGGCGGTCCCCAGCATCAAATACAACATAATGCTTCCTCTCTGTCAGATCATGGATTCCACCAGATGATGCCTAAGCTCATTCCTCTGACGCCTAATGCACCAAGTAGACAATCGTCTATATCGTCGCAATATAATTATGCTCAACCTCCACCACCTCTACCCTTTGGTAACAGCGGCGGCTCTGGATCGAACTATTCAGCTTCTGACTCATTTTCGAGGTCTTCTCAAGCTCTTTCATTGAACTTTGTGAAGAGCACATTTTCATATGAGGAGTTGATGTGTGCGACCGATGGCTTCTCCGATGCCAACCTCCTTGGATCAGGCGGGTTCGGGTATGTGCATAGAGGACTTCTTGCCAATGGCAAGGAAGTGGCTGTCAAGCAGCTTAAGGCTGGAAGCAGGCAAGGCGAGCGCGAATTTCAAGCCGAACTTGAGATAATTAGCCGTGTTCATCACAAACATCTTGTTTCTTTGGTGGGATACTGCATCACTGGGACCCAGAGGCTGCTTGTTTATGAATTCATTCCCAACAATACATTGGAATTCCATTTACATGGAAAAGGGAGACCTACCATGGATTGGATCACAAGACTGCGAATTGCATTAGGATCTGCAAAAGGATTGGCATATCTTCATGAGGATTGTCATCCTAAGATCATCCATCGCGATATCAAAGCTGCTAACATCCTTCTGGACTTCAAGTTTGAAGCAAAGGTTGCGGATTTTGGGCTTGCAAAGATTTATTCTGAATCCAATACTCCTGTTTCTACTAGAGTGATGGGGACTTTCGGGTATCTTGCTCCAGAGTATGCTTCTAGTGGAAAACTTACAGACAAATCTGATGTGTTCTCCTACGGAATCATGCTCCTTGAGTTAATAACTGGAAAACGCCCGGTTGATAAAAATTATTCTTTCACGGACAGTTTGGTAGACTGGGCTAGACCTTTGCTCACACGTTCTTTGGCAGAGAATAATTTCGCTTCTCTGGTCGACCCAAGGCTCCAGAACGAGTTTGATCGTCATGAGATGGCTCGTATGGTGGCGTGTGCTGCAGCTTGCATATGTCATTCAGCAAAACGTCGACCAAGGATGAGCCAGGTTGTTCGCGCTCTGGAAGGGGATGTGTCACTATCAGATTTCAGTGAAGGAATTGCACCTGGGAGCAGCACTCCATACAGTTCCTATGAAAGCTCAGATTATGACCCCTCACAATACAAGGAGGACATGAAAAAGTTCCGAAAAACAGCTCTCGAGGGAACCCACGAGTATGGTGCCAGCAGCGGGTACAGCGCGACAAGTGAGTACGGTTTATACCCATCTGGATCAAGCAGTGAAGGGCAGAGCCGCCGAGCCACAAGAGAAATGAAAACAGTGAATACAAAAGGTTCCAGTACTGGAAAATCTTGA 1839 0.4818 MPFPPFPSSPPPSNATHLHSLIASNPTPPPPDTHSPPPPPDSHSPPPPATPSPPPPATPTPHHPSVPLPRIHPKSPPSEPPPSWSSSVSTGLVFGILGGAVLLVLVLSSIMCICCMKKKKRPNQGKPYPPHLTPSQSQHKADAYGGPQHQIQHNASSLSDHGFHQMMPKLIPLTPNAPSRQSSISSQYNYAQPPPPLPFGNSGGSGSNYSASDSFSRSSQALSLNFVKSTFSYEELMCATDGFSDANLLGSGGFGYVHRGLLANGKEVAVKQLKAGSRQGEREFQAELEIISRVHHKHLVSLVGYCITGTQRLLVYEFIPNNTLEFHLHGKGRPTMDWITRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIYSESNTPVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGIMLLELITGKRPVDKNYSFTDSLVDWARPLLTRSLAENNFASLVDPRLQNEFDRHEMARMVACAAACICHSAKRRPRMSQVVRALEGDVSLSDFSEGIAPGSSTPYSSYESSDYDPSQYKEDMKKFRKTALEGTHEYGASSGYSATSEYGLYPSGSSSEGQSRRATREMKTVNTKGSSTGKS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0434 612 Gene3D Transferase(Phosphotransferase) domain 1 319 524 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 569 592 - -
Lal25g0434 612 Gene3D Phosphorylase Kinase; domain 1 205 318 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 175 190 - -
Lal25g0434 612 SUPERFAMILY Protein kinase-like (PK-like) 217 515 IPR011009 -
Lal25g0434 612 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524
Lal25g0434 612 ProSiteProfiles Protein kinase domain profile. 243 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0434 612 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 4 598 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 1 88 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 24 83 - -
Lal25g0434 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Lal25g0434 612 MobiDBLite consensus disorder prediction 169 212 - -
Lal25g0434 612 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 598 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 120 154 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 130 154 - -
Lal25g0434 612 MobiDBLite consensus disorder prediction 567 612 - -
Lal25g0434 612 Pfam Protein tyrosine and serine/threonine kinase 248 515 IPR001245 GO:0004672|GO:0006468
Lal25g0434 612 SMART serkin_6 243 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0434 Lal-Chr25 2950197 2955717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0434 42 596 Trihelix Transcription Factor Family AT1G70460 46.869 1.75e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal25g0434 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0434 - - gmx:732569 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0393 8 2643478 2647906 Lal25g0434 25 2950197 2955717 LSH
Lal25g0434 25 2950197 2955717 Lal10g1011 10 17294780 17299060 LSH