Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0428 ATGTCTGTGCCATTAGAGCAAGGCTTATCATCAGAGATTCTAACAATGGAAAAAACCTCTGAAATGTTTTCTCATAAAAGTAAAACCACAACATGTAGCAGTGGCTTAAACCTTAAGGCTACTGAACTGAGACTAGGCTTGCCTGGTTCTGAGTCACCAGAGAGAGATGAGAACAATGTTGTTGTGTACCCTTTAAGCATGCACAACAAGTGTTTTGTGTCTGGTGCCAAAAGGGGTTTCTCAGATGCCATTGATGGTGGTTCTGGAAACTGGGTTCTCTCTGGAAATGGTGGATCTGATGTGGGTTTGGGTAAAGATGGTAACTTGTTTTCTCCTAGGAGTGTTACTGCTTCTAAGGCTCTTGTTGGAGTTGAGTGTAGTAACCAACAAAAAGTATCTGTTGTGAAAGATAAAGTTTCTAACTCTCCAAAACCATTGAATGAGAAGAAGCCTCAGATATCTGCTACTGCTGCAAAGGAACAAGTTGTAGGATGGCCACCAATCTGTTCTTTCCGGAAGAATTCAATGGCTACTCAGCCTCAAAAGAATGATGATGATGTAGAAACCAAGTCTGGTTGCCTTTATGTAAAAGTTAGCATGGATGGTGCTCCTTACTTGAGGAAAGTCGATCTCAAAAACTTCGGCACTTACAGGGAACTATCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGACTCTCATAAGTTGAGTGAAAGTAGATTGATGGATCTACTCCATGGTTCGGAATATGTGCTCACCTATGAAGACAGGGATGGTGATTGGATGCTAGTTGGAGATGTTCCGTGGGAGATGTTCACTGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATCGGACTCGCACCAAGAGCCATGGAAAAGAGCAGAAGTCGGAACTAG 924 0.4199 MSVPLEQGLSSEILTMEKTSEMFSHKSKTTTCSSGLNLKATELRLGLPGSESPERDENNVVVYPLSMHNKCFVSGAKRGFSDAIDGGSGNWVLSGNGGSDVGLGKDGNLFSPRSVTASKALVGVECSNQQKVSVVKDKVSNSPKPLNEKKPQISATAAKEQVVGWPPICSFRKNSMATQPQKNDDDVETKSGCLYVKVSMDGAPYLRKVDLKNFGTYRELSSALEKMFSCFTISQCDSHKLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKSRSRN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0428 307 MobiDBLite consensus disorder prediction 135 155 - -
Lal25g0428 307 Pfam AUX/IAA family 41 298 IPR033389 -
Lal25g0428 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 300 IPR003311 GO:0005634|GO:0006355
Lal25g0428 307 SUPERFAMILY CAD & PB1 domains 191 288 - -
Lal25g0428 307 ProSiteProfiles PB1 domain profile. 193 289 IPR000270 GO:0005515
Lal25g0428 307 PANTHER AUXIN-INDUCED PROTEIN 29 300 - -
Lal25g0428 307 Gene3D - 187 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0428 Lal-Chr25 2903576 2908285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0428 169 301 B3 DNA Binding Superfamily AT1G19850 30.827 1.11e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal25g0428 AUX_IAA 7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0428 K14484 - gmx:100803754 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0383 8 2558377 2568044 Lal25g0428 25 2903576 2908285 LSH
Lal25g0428 25 2903576 2908285 Lal10g1020 10 17369097 17375552 LSH