Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0407 ATGGGAAGAGCCACAAGATGGTTGAAGAACTTGTTTGGTATAAAAAGAGACAAAGAACAACAACACAAAGAAAACTCAAATTCTAGAATTTTATGTCACAATCCAGCAACTATACCACCCAACCTTTCTACAGCAGAAGCAGCTTGGTTACAATCTTTCTATAAAGAAACAGATAATGAGCAGAATAAGCATGCACTTGCTGTTGCTGAAGCCACCGCAACGGCGGCTAATGCTGCGGTGGCTGCAGCACAGGCTGCTGTGGTAATGGTTAGGCTGACCAGCCATGACAGAAGTACCATGTTTAGTGGTGGACATCAGATGTGTGCTGCTATTAAGGTTCAGACCCTCTTTAGAGGATTCTTGGCAAGAAAGGCACTGAGAGCATTAAAAGGATTGGTGAAGTTACAGGCACTTGTGAGAGGGTATTTAGTGAGGAAACAAGCAACAGCAACATTGCACAGTATGCAGGCTCTTATTAGAGCTCAAGCTACTGTTAGGTCTCACAAATCTCGCGGCCTCATTAGCACGAAAAATGAAGCATATAGATTCCAAAACCGAGCAAGAAGATCCATGGAGATATTTGATGACTATAGGAGTGAGTACACAGCTCCAATCCACAGTAGAAGGCTATCATCCTCATTTGATACCCCAATTAACTACTTCAACAACACCAATAGTGTTGATGAGAGCCCGAAAATTGTGGAAGTGGACACTGGCAATAGCAGGCCTAATTCAAGGTCTAGAAGGACTAACACCTCAATTTCAGATTTTGGAGATGACCCTTCATTCCAAACACTTTCATCTCCACTCCCAATTCCATATGCTAGATTATCCATACCAGACCATAGAAATTTCAATGATTCATCAGAGTGTGAGTTAACAGGAGAAGAATGCAGGTTCTCCTCTACCGCGCACAACACTCCAAGGTTCACAAACTCCTGTAGTTGTGGTGCAACTGTGACACCAAACGCTGTGGGCACTGATTACTTGTTCCTAAGAGAATATGGGAACTATCCAAATTACATGGGCAATACTCAGTCTTTCAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAAAGGCCAGAACATGGTCAAATTAGGAAGAGGATTTCACTCAATGAAATGATGGAGTCTGGTAATAGTTTGAGTGGATTTAGAATGCATAGGTCTGGCTCACAGGTTCAAGAAGCTGTTAATTTCAAGAATGCTGTGATGGGTAAGCTTTATAAGTCCACAGAATCTGCTAAGGAGATGGAAAGAAATTACTTCCACAGTAGAAGGTGTTGA 1290 0.4248 MGRATRWLKNLFGIKRDKEQQHKENSNSRILCHNPATIPPNLSTAEAAWLQSFYKETDNEQNKHALAVAEATATAANAAVAAAQAAVVMVRLTSHDRSTMFSGGHQMCAAIKVQTLFRGFLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLISTKNEAYRFQNRARRSMEIFDDYRSEYTAPIHSRRLSSSFDTPINYFNNTNSVDESPKIVEVDTGNSRPNSRSRRTNTSISDFGDDPSFQTLSSPLPIPYARLSIPDHRNFNDSSECELTGEECRFSSTAHNTPRFTNSCSCGATVTPNAVGTDYLFLREYGNYPNYMGNTQSFKAKLRSHSAPKQRPEHGQIRKRISLNEMMESGNSLSGFRMHRSGSQVQEAVNFKNAVMGKLYKSTESAKEMERNYFHSRRC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0407 429 Pfam Protein of unknown function (DUF4005) 308 387 IPR025064 -
Lal25g0407 429 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Lal25g0407 429 MobiDBLite consensus disorder prediction 231 262 - -
Lal25g0407 429 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Lal25g0407 429 PANTHER IQ-DOMAIN 5-RELATED 1 413 - -
Lal25g0407 429 Pfam IQ calmodulin-binding motif 108 127 IPR000048 GO:0005515
Lal25g0407 429 Pfam IQ calmodulin-binding motif 133 147 IPR000048 GO:0005515
Lal25g0407 429 SMART iq_5 128 149 IPR000048 GO:0005515
Lal25g0407 429 SMART iq_5 105 127 IPR000048 GO:0005515
Lal25g0407 429 Gene3D - 106 147 - -
Lal25g0407 429 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0407 Lal-Chr25 2761411 2764678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0407 1 388 IQD Protein Family AT3G16490 48.872 4.70e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0407 - - gmx:100788710 495.352