Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0402 ATGGAATGTGAAGATCATGATCAAGAAACATCAGAAGGTAGAAGTAAAGTTATCATGACAAGGTCCTATGAATGCAACTTCTGCAAGAGGGGTTTCTCTAATGCACAAGCACTAGGAGGACACATGAATATTCATAGAAAAGACAAAGCAAAACTCAAACAAACTTCAACTTTATCAACCCAATTCTCTTTGGACAATAATCCTCAAAAAGTTCCTCAACTTTTGCCCTTAAATGTGTCCCTAAAAGATGGTGTCACCTCAAGAGATGAAACAACCCATGTTGTTGTTCAAATAAAACAGCTTCCACTCTTTGATGATTCACAAAAGCCACAATCTGAAGATCTTGCAGAAAATAATGATGAAAGTGAAACTAGGGTTTTGCCATGTAGCCAAGGCTCATCATCAGAGTTAGACCTTGAACTAAGATTAGGGCTTGATCCTGAGGATTCATCAGCCACAATGGGTACCAGAAAATTCTTTTGA 483 0.3789 MECEDHDQETSEGRSKVIMTRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQTSTLSTQFSLDNNPQKVPQLLPLNVSLKDGVTSRDETTHVVVQIKQLPLFDDSQKPQSEDLAENNDESETRVLPCSQGSSSELDLELRLGLDPEDSSATMGTRKFF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0402 160 MobiDBLite consensus disorder prediction 123 137 - -
Lal25g0402 160 MobiDBLite consensus disorder prediction 106 137 - -
Lal25g0402 160 Gene3D Classic Zinc Finger 6 73 - -
Lal25g0402 160 SUPERFAMILY beta-beta-alpha zinc fingers 21 50 IPR036236 -
Lal25g0402 160 Pfam C2H2-type zinc finger 23 47 - -
Lal25g0402 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Lal25g0402 160 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Lal25g0402 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 105 152 - -
Lal25g0402 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 71 - -
Lal25g0402 160 PANTHER OS07G0101800 PROTEIN 105 152 - -
Lal25g0402 160 PANTHER OS07G0101800 PROTEIN 4 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0402 Lal-Chr25 2722774 2723256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0402 20 156 C2H2 Transcription Factor Family AT3G53820 37.931 2.09e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal25g0402 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0402 - - lang:109351329 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0402 25 2722774 2723256 Lal25g0402 25 2722774 2723256 ECH