Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0395 ATGGCTCCTTCAACTCCAATCGCACCTCTTCCAACTCCTTCGAAAACCAATCCCCAATCTCAATCGCTTCTTCCTCGTAGATCCACGCGCCGCTCCATCAATCCTTTCGCCACTCCTCCAAAGGAGAATTCCACTGAGATCGTTAATGGTTCGGTTAGTAAACGTGGATCTGGAAAATTGAACCGGAGAAACGGAAAAGCTTCGGTTCAATTATCGTTATTCGATGTGTTGGTGGATCAGGATGAAGCTGGAAAATCAGTTGGTGAATGTGAGTCTGGAGTAGTTAATGGGAGAGATGGAAAGGGTTCGGTTATTCGATCGGTTGCGAAGAAGAGGAAGAGGGAGGATGATGATGAGGATAAAAAAACGATTGATAAATTTGGATCTGAAGTTTTGAAACCGGGAAATGGGAAAGGTTTGGTTGAAATTTGTTTCGGTACTGTGACACCGGTTCAATCGGAGAAGAGGAAGAGGAGGAAGAAGGAGGATGAGGGTGAAGGTAAAAGAACGGTTACTAGAGCTACAGCGGCATCGAGAAAAGGGAAATTAAATTTGAAATTGGAGAAGAAAGTGAAAAAGAGTAAGCCTAAGAGGCGTGTGTATTATAAGAAGGTGGTTTACGATGGGGGCGAGTTTGGAGTAGGGGATGATGTGTATGTGAAGAGAAGAGAAGATGGTTGCTCTGATGAGGAGGTAGATCCTGTAGTGGAGGAGTGTAGGATTTGCTTTGATTCTGGAAGTGAGGTTATGCTTGAATGTGATGATTGCTTAGGAGGGTTTCATTTGAAGTGTTTGAAGCCGCCGTTGAATGAAGTTCCAGAAGGGGATTGGATATGTGGGTTTTGTGTGGATATTAAGATGGGTACGAAGGTTCAATTTCCACAACCTCCACAGGGCAAGAAATTAGTTAGAACAATGAGGCAGAAGCTTCTCGAGAGTGATTTGTGGGCTGCTCATATTGAAAGTATATGGAAAGAAGTGGATGGCAACTATCAGTGTCGAGTACGGTGGTATACAATTCCAGAAGAGACTTCTGTTGGGAGGCAACCACATAGCCTGAGCAGGGAGCTATATAGAACAAATGATTTTGCAGACATTGAGATGGAATCTGTCCTTCGACATTGCTTTGTCAAGACCCCCAAAGAATATGCAAAGGCTTGCAATGAGGGGGATGATGTTTTCTTGTGTGAATACGAATATGACATCCGTTGGCACAGTTTCAAACGCCTTGATGATATTGACAATGAAAGAGAGGATGGCCATGAAACTGACAGCGATGAGGATTGGAATCTTTCCAAGGAATCAGACTCTGATACAGATGAAGATGTTGAATATGACGAGGAGACAATTAAAAATGCACAATCTCAGCCACCGACAAGCCATCAATTAGCTGCGAATCTTCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCGCAGCATGTAAGGTCTCACAAACAGACTGATATTGAGAGAGCAAAGGCTACACTGCTGTTGTCATCACTGCCTAAATCCCTACCTTGTAGAAATAAGTATGTTGAACTCTTTGAAGTTCCTAATCAATGCATGATTTTGTATAGAGAAATGGAGGAGATATCTACTTTTATTAAAAGTGCTATAGTTGATGATCAATGTCTTGGGCGTTGCCTCTACATTCATGGTGTTCCAGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGAAGTTTGAGGTCAGAAGTTGATGCAGGACACATCAGACCGTACAGTTTTGTGGAGATTAATGGTCTGAAGTTGGCATCACCAGAAAATATTTATAGGGTCATATATGAGGCGTTAAATGGACACAGAGTCAGCTGGAAAAAGGCTCTCCACTTCCTAAATGAGAGATTCGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTTGTAACCAGAAACCAATCGGTTCTATACAACATTCTTGACTGGCCTACGAAGCCACATTCCAAACTAATTGTAATAGGGATAGCAAATACTATGGATCTTCCAGAGAAATTACTTCCTCGTATATCAAGCCGAATGGGCATACATAGGCTTTGTTTTGGCCCATATAATTATCAGCAACTTCAAGAAATCATTTCCAGTCGCCTCAATGGAATTGATGTATTTGAGAAGCAAGCTGTAGAATTTGCATCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTTTAGAGATGTGTAGGCGTGCAGCTGAAATAGTAGATTATCGTATGAAGAAGCTAAATTCAAATCCAGATTCTGTCAACATGGGTAAGGGTCTTGTTGGTATGGCAGACATTGAAGCAGCCATTCAGGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAGTTGTTCAAAACTTAGCAAAATCTTCCTGACGGCAATGGTGCACGAGCTTTACAAAACAGGAATGGGAGAAACCACTTTCGAAAAGTTGGCAATGACGGTTTCACGTCTCTGTATCAGCAATGGAGAAGAGTTTCCTGGATATGATACTCTCCTTCAAGTTGGCTGTAAGCTAGGCGAATGCCGGGTTATTTTATGTGAATCGGGTGCGAAACACAGGTTGCAAAAATTGCAGCTTAATTTCCCAAGTGATGATGTAACCTTTGCTCTAAGAGACTGCAAAGATCTACCATGGTTGTCGAAGTATCTAATGTAG 2727 0.4221 MAPSTPIAPLPTPSKTNPQSQSLLPRRSTRRSINPFATPPKENSTEIVNGSVSKRGSGKLNRRNGKASVQLSLFDVLVDQDEAGKSVGECESGVVNGRDGKGSVIRSVAKKRKREDDDEDKKTIDKFGSEVLKPGNGKGLVEICFGTVTPVQSEKRKRRKKEDEGEGKRTVTRATAASRKGKLNLKLEKKVKKSKPKRRVYYKKVVYDGGEFGVGDDVYVKRREDGCSDEEVDPVVEECRICFDSGSEVMLECDDCLGGFHLKCLKPPLNEVPEGDWICGFCVDIKMGTKVQFPQPPQGKKLVRTMRQKLLESDLWAAHIESIWKEVDGNYQCRVRWYTIPEETSVGRQPHSLSRELYRTNDFADIEMESVLRHCFVKTPKEYAKACNEGDDVFLCEYEYDIRWHSFKRLDDIDNEREDGHETDSDEDWNLSKESDSDTDEDVEYDEETIKNAQSQPPTSHQLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDIERAKATLLLSSLPKSLPCRNKYVELFEVPNQCMILYREMEEISTFIKSAIVDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGHIRPYSFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHFLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIHRLCFGPYNYQQLQEIISSRLNGIDVFEKQAVEFASRKVAAISGDARRALEMCRRAAEIVDYRMKKLNSNPDSVNMGKGLVGMADIEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVHELYKTGMGETTFEKLAMTVSRLCISNGEEFPGYDTLLQVGCKLGECRVILCESGAKHRLQKLQLNFPSDDVTFALRDCKDLPWLSKYLM 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0395 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 763 IPR027417 -
Lal25g0395 908 SMART PHD_3 238 283 IPR001965 -
Lal25g0395 908 SUPERFAMILY FYVE/PHD zinc finger 227 286 IPR011011 -
Lal25g0395 908 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 176 903 IPR020793 -
Lal25g0395 908 MobiDBLite consensus disorder prediction 14 66 - -
Lal25g0395 908 SMART AAA_5 551 705 IPR003593 -
Lal25g0395 908 MobiDBLite consensus disorder prediction 152 179 - -
Lal25g0395 908 ProSiteProfiles BAH domain profile. 295 411 IPR001025 GO:0003682
Lal25g0395 908 Gene3D - 493 703 IPR027417 -
Lal25g0395 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 300 IPR013083 -
Lal25g0395 908 Pfam AAA lid domain 729 762 IPR041083 -
Lal25g0395 908 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 176 903 - -
Lal25g0395 908 MobiDBLite consensus disorder prediction 104 122 - -
Lal25g0395 908 MobiDBLite consensus disorder prediction 1 66 - -
Lal25g0395 908 SMART BAH_4 283 411 IPR001025 GO:0003682
Lal25g0395 908 MobiDBLite consensus disorder prediction 152 170 - -
Lal25g0395 908 Gene3D - 704 795 - -
Lal25g0395 908 Pfam BAH domain 319 409 IPR001025 GO:0003682
Lal25g0395 908 Gene3D - 180 428 IPR043151 -
Lal25g0395 908 ProSitePatterns Zinc finger PHD-type signature. 239 282 IPR019786 -
Lal25g0395 908 MobiDBLite consensus disorder prediction 85 122 - -
Lal25g0395 908 Pfam PHD-finger 239 283 IPR019787 -
Lal25g0395 908 MobiDBLite consensus disorder prediction 417 460 - -
Lal25g0395 908 Pfam ATPase family associated with various cellular activities (AAA) 556 701 IPR003959 GO:0005524|GO:0016887
Lal25g0395 908 MobiDBLite consensus disorder prediction 433 447 - -
Lal25g0395 908 ProSiteProfiles Zinc finger PHD-type profile. 236 285 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0395 Lal-Chr25 2670064 2675441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0395 199 907 Core DNA Replication Machinery Family AT4G14700 67.827 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal25g0395 AAA 1.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0395 K02603 - gmx:100798547 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0395 25 2670064 2675441 Lal25g0395 25 2670064 2675441 ECH